Os12g0581600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Integral membrane protein.
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Os12g0581600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Integral membrane protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 210.21 | 0.681 | 7.92 | -0.765 | 0.843 | 1.51 | 0.259 | 3.08 | -1.23 | 21.5 | 68.27 | 6209 | -- | -- |
| 222.15 | 0.694 | 7.92 | -0.795 | 0.863 | 1.66 | 0.42 | -- | -1.3 | 20.9 | 68.04 | 6940 | -- | -- |
| 210.45 | 0.676 | 7.92 | -0.774 | 0.842 | 1.51 | -- | 3.09 | -1.23 | 21.6 | 68.25 | 6210 | -- | -- |
| 215.04 | 0.683 | 7.91 | -0.391 | 0.775 | 1.61 | -- | -- | -1.31 | 20.9 | 66.87 | 19798 | -- | -- |
| 245.55 | 0.73 | 7.91 | -0.729 | -- | 1.74 | -- | 3.06 | -1.24 | -- | 68.4 | 6536 | -- | -- |
| 262.52 | 0.76 | 7.89 | -0.961 | 0.918 | -- | 0.423 | -- | -1.14 | 21.2 | -- | -- | -- | -- |
| 263.16 | 0.76 | 7.89 | -0.977 | 0.916 | -- | -- | -- | -1.14 | 21.2 | -- | -- | -- | -- |
| 256.48 | 0.746 | 7.91 | -0.348 | -- | 1.73 | -- | -- | -1.32 | -- | 67 | 19654 | -- | -- |
| 209.68 | 0.674 | 7.94 | -- | 0.864 | 1.94 | -- | -- | -1.28 | 21 | 63 | 21309 | -- | -- |
| 311.94 | 0.825 | 7.86 | -0.973 | -- | -- | -- | -- | -1.15 | -- | -- | -- | -- | -- |
| 288.3 | 0.794 | 7.86 | -- | 0.916 | -- | -- | -- | -1.04 | 21.2 | -- | -- | -- | -- |
| 252.16 | 0.74 | 7.87 | -- | -- | 1.97 | -- | -- | -1.2 | -- | 61.97 | 19649 | -- | -- |
| 336.91 | 0.857 | 7.84 | -- | -- | -- | -- | -- | -1.04 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 194.96 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 13 | 1 |
| 5 | 198.68 | humidity | 70.0 | 14400 | < th | dose dependent | rect. | 8 | 6 |
| 7 | 198.81 | humidity | 70.0 | 14400 | < th | dose dependent | rect. | 19 | 19 |
| 39 | 199.59 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 8 | 6 |
| 41 | 199.60 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 19 | 19 |
| 61 | 200.30 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 4 | 6 |
| 62 | 200.30 | humidity | 70.0 | 14400 | < th | dose dependent | sin | 6 | NA |
| 63 | 200.30 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 4 | 6 |
| 68 | 200.37 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 4 | 6 |
| 71 | 200.43 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 4 | 6 |
| 101 | 200.61 | humidity | 80.0 | 14400 | < th | dose dependent | rect. | 8 | 2 |
| 103 | 200.64 | humidity | 60.0 | 14400 | < th | dose independent | sin | 5 | NA |
| 109 | 200.83 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 9 | 1 |
| 115 | 200.94 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 8 | 5 |
| 117 | 200.96 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 12 | 21 |
| 121 | 201.05 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 11 | 1 |
| 122 | 201.08 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 12 | 8 |
| 145 | 201.15 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 19 | 18 |
| 159 | 201.39 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 22 | 15 |
| 168 | 201.50 | humidity | 60.0 | 14400 | > th | dose independent | sin | 6 | NA |
| 282 | 202.64 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 15 | 1 |
| 283 | 202.64 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 15 | 1 |
| 335 | 203.03 | humidity | 60.0 | 14400 | < th | dose dependent | sin | 17 | NA |
| 339 | 203.07 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 8 | 12 |
| 398 | 203.29 | humidity | 60.0 | 14400 | < th | dose independent | no | NA | NA |
| 448 | 203.32 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 449 | 203.32 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 15 | 1 |
| 587 | 203.81 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 11 | 23 |
| 598 | 203.94 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 7 | 3 |
| 613 | 204.09 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 8 | 12 |
| 619 | 204.14 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 8 | 17 |
| 633 | 204.18 | humidity | 70.0 | 14400 | < th | dose dependent | rect. | 8 | 13 |
| 679 | 204.27 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 23 | 21 |
| 686 | 204.28 | humidity | 70.0 | 14400 | < th | dose dependent | no | NA | NA |
| 758 | 204.31 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 8 | 3 |
| 811 | 204.34 | humidity | 60.0 | 14400 | > th | dose independent | no | NA | NA |
| 992 | 204.69 | wind | 1.0 | 14400 | > th | dose independent | rect. | 3 | 5 |
| 997 | 204.74 | wind | 1.0 | 14400 | < th | dose independent | rect. | 3 | 5 |