Os12g0578600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, C2H2-type domain containing protein.
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Os12g0578600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, C2H2-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 342.78 | 0.87 | 4.03 | -0.317 | 1.37 | 2.19 | -0.81 | 1.31 | -0.191 | 16.8 | 24.1 | 279 | -- | -- |
| 343.24 | 0.863 | 4.06 | -0.496 | 1.37 | 2.27 | -0.508 | -- | -0.249 | 16.8 | 23.9 | 278 | -- | -- |
| 343.96 | 0.864 | 4.05 | -0.456 | 1.36 | 2.24 | -- | 0.371 | -0.242 | 16.8 | 24 | 271 | -- | -- |
| 343.92 | 0.864 | 4.06 | -0.512 | 1.36 | 2.27 | -- | -- | -0.257 | 16.8 | 23.9 | 278 | -- | -- |
| 400.69 | 0.932 | 4.09 | -0.996 | -- | 3.58 | -- | -1.83 | -0.451 | -- | 24.29 | 279 | -- | -- |
| 432.36 | 0.975 | 4.01 | -0.0905 | 2.41 | -- | 0.439 | -- | 0.0111 | 16.9 | -- | -- | -- | -- |
| 432.86 | 0.974 | 4.01 | -0.0892 | 2.41 | -- | -- | -- | 0.0133 | 16.9 | -- | -- | -- | -- |
| 402.27 | 0.934 | 4.06 | -0.738 | -- | 3.43 | -- | -- | -0.385 | -- | 24.23 | 274 | -- | -- |
| 350.47 | 0.872 | 4.04 | -- | 1.43 | 2.14 | -- | -- | -0.181 | 16.8 | 24 | 278 | -- | -- |
| 738.83 | 1.27 | 3.99 | -0.178 | -- | -- | -- | -- | -0.0488 | -- | -- | -- | -- | -- |
| 433.07 | 0.973 | 4.01 | -- | 2.41 | -- | -- | -- | 0.0232 | 16.9 | -- | -- | -- | -- |
| 416.15 | 0.95 | 4.04 | -- | -- | 3.33 | -- | -- | -0.28 | -- | 24.36 | 274 | -- | -- |
| 739.66 | 1.27 | 3.98 | -- | -- | -- | -- | -- | -0.0291 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 342.81 | temperature | 25 | 270 | > th | dose dependent | rect. | 8 | 13 |
| 2 | 342.91 | temperature | 25 | 270 | > th | dose dependent | rect. | 24 | 21 |
| 44 | 343.99 | temperature | 25 | 270 | > th | dose dependent | rect. | 13 | 23 |
| 51 | 344.18 | temperature | 25 | 270 | > th | dose dependent | rect. | 8 | 22 |
| 75 | 344.57 | temperature | 25 | 270 | > th | dose dependent | no | NA | NA |
| 77 | 344.58 | temperature | 25 | 270 | > th | dose dependent | rect. | 4 | 23 |
| 97 | 345.26 | temperature | 10 | 90 | > th | dose dependent | sin | 20 | NA |
| 104 | 345.76 | temperature | 25 | 270 | > th | dose dependent | sin | 22 | NA |
| 109 | 345.91 | temperature | 20 | 90 | > th | dose dependent | sin | 19 | NA |
| 122 | 346.57 | temperature | 25 | 270 | > th | dose dependent | rect. | 11 | 23 |
| 149 | 347.60 | temperature | 30 | 30 | < th | dose dependent | sin | 19 | NA |
| 192 | 349.28 | temperature | 25 | 720 | > th | dose dependent | rect. | 7 | 5 |
| 385 | 353.42 | temperature | 25 | 720 | > th | dose dependent | sin | 5 | NA |
| 387 | 353.45 | humidity | 90 | 270 | < th | dose dependent | rect. | 7 | 12 |
| 501 | 355.40 | temperature | 30 | 270 | < th | dose dependent | rect. | 9 | 12 |
| 561 | 356.29 | humidity | 60 | 90 | > th | dose dependent | sin | 20 | NA |
| 611 | 356.85 | humidity | 80 | 90 | < th | dose dependent | rect. | 11 | 23 |
| 638 | 357.24 | humidity | 50 | 270 | > th | dose dependent | sin | 22 | NA |
| 692 | 357.88 | humidity | 90 | 270 | < th | dose dependent | sin | 22 | NA |
| 750 | 358.36 | humidity | 90 | 90 | < th | dose dependent | sin | 20 | NA |
| 772 | 358.53 | humidity | 80 | 270 | < th | dose dependent | rect. | 20 | 23 |
| 783 | 358.62 | temperature | 30 | 270 | < th | dose independent | rect. | 3 | 23 |
| 791 | 358.71 | humidity | 80 | 270 | < th | dose dependent | rect. | 7 | 19 |
| 894 | 359.17 | humidity | 80 | 270 | < th | dose dependent | no | NA | NA |
| 973 | 359.88 | humidity | 80 | 270 | < th | dose dependent | rect. | 13 | 23 |