Os12g0578500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Glycosyl transferase, family 8 protein.
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Os12g0578500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Glycosyl transferase, family 8 protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 29.98 | 0.257 | 10.9 | 0.194 | 0.329 | 0.264 | 0.0894 | 0.428 | 0.259 | 20.8 | 24.7 | 197 | -- | -- |
| 30.72 | 0.258 | 10.9 | 0.297 | 0.338 | 0.275 | 0.0472 | -- | 0.277 | 20.7 | 24.8 | 191 | -- | -- |
| 30.01 | 0.255 | 10.9 | 0.192 | 0.328 | 0.263 | -- | 0.424 | 0.259 | 20.8 | 24.71 | 196 | -- | -- |
| 30.62 | 0.258 | 10.9 | 0.322 | 0.336 | 0.289 | -- | -- | 0.306 | 20.8 | 24.77 | 215 | -- | -- |
| 34.73 | 0.274 | 10.9 | 0.208 | -- | 0.251 | -- | 0.351 | 0.263 | -- | 24.4 | 64 | -- | -- |
| 35.05 | 0.278 | 10.9 | 0.238 | 0.306 | -- | 0.134 | -- | 0.154 | 23 | -- | -- | -- | -- |
| 35.13 | 0.278 | 10.9 | 0.233 | 0.306 | -- | -- | -- | 0.154 | 23 | -- | -- | -- | -- |
| 35.31 | 0.277 | 10.9 | 0.317 | -- | 0.265 | -- | -- | 0.302 | -- | 24.36 | 64 | -- | -- |
| 33.25 | 0.269 | 10.9 | -- | 0.322 | 0.251 | -- | -- | 0.253 | 21 | 24.7 | 188 | -- | -- |
| 40.94 | 0.299 | 10.9 | 0.24 | -- | -- | -- | -- | 0.156 | -- | -- | -- | -- | -- |
| 36.56 | 0.283 | 10.9 | -- | 0.308 | -- | -- | -- | 0.128 | 23 | -- | -- | -- | -- |
| 37.91 | 0.287 | 10.9 | -- | -- | 0.236 | -- | -- | 0.251 | -- | 24.4 | 77 | -- | -- |
| 42.45 | 0.304 | 10.9 | -- | -- | -- | -- | -- | 0.13 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 27.84 | temperature | 25 | 270 | < th | dose independent | rect. | 24 | 17 |
| 7 | 28.03 | temperature | 25 | 270 | > th | dose independent | rect. | 23 | 13 |
| 16 | 28.17 | temperature | 25 | 90 | < th | dose independent | rect. | 3 | 15 |
| 27 | 28.30 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 14 |
| 28 | 28.33 | temperature | 25 | 270 | > th | dose independent | rect. | 18 | 19 |
| 34 | 28.38 | temperature | 15 | 270 | > th | dose dependent | rect. | 5 | 8 |
| 38 | 28.40 | temperature | 25 | 270 | > th | dose independent | sin | 7 | NA |
| 41 | 28.43 | temperature | 25 | 270 | < th | dose independent | sin | 7 | NA |
| 59 | 28.63 | temperature | 30 | 10 | < th | dose dependent | rect. | 4 | 14 |
| 62 | 28.64 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 8 |
| 112 | 28.94 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 5 |
| 135 | 29.02 | temperature | 20 | 90 | > th | dose dependent | rect. | 19 | 19 |
| 174 | 29.15 | temperature | 20 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 202 | 29.26 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 10 |
| 211 | 29.29 | temperature | 20 | 10 | > th | dose dependent | rect. | 20 | 18 |
| 212 | 29.30 | temperature | 25 | 30 | > th | dose independent | rect. | 9 | 5 |
| 216 | 29.30 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 16 |
| 240 | 29.36 | temperature | 20 | 10 | > th | dose dependent | sin | 3 | NA |
| 266 | 29.44 | atmosphere | 1000 | 90 | > th | dose independent | rect. | 3 | 16 |
| 275 | 29.46 | temperature | 10 | 10 | > th | dose dependent | sin | 2 | NA |
| 298 | 29.50 | temperature | 10 | 90 | > th | dose dependent | rect. | 8 | 19 |
| 342 | 29.59 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 15 |
| 351 | 29.61 | temperature | 25 | 270 | > th | dose independent | rect. | 8 | 4 |
| 367 | 29.63 | temperature | 30 | 90 | < th | dose dependent | sin | 3 | NA |
| 379 | 29.65 | temperature | 10 | 10 | > th | dose dependent | rect. | 9 | 18 |
| 404 | 29.69 | temperature | 25 | 90 | < th | dose independent | rect. | 3 | 8 |
| 416 | 29.70 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 20 |
| 436 | 29.74 | temperature | 20 | 10 | > th | dose dependent | rect. | 2 | 12 |
| 507 | 29.82 | wind | 5 | 270 | < th | dose independent | rect. | 6 | 19 |
| 510 | 29.82 | wind | 5 | 270 | < th | dose independent | rect. | 5 | 22 |
| 545 | 29.85 | atmosphere | 995 | 90 | > th | dose dependent | rect. | 3 | 16 |
| 561 | 29.87 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 19 |
| 702 | 30.04 | atmosphere | 995 | 10 | > th | dose dependent | rect. | 4 | 15 |
| 755 | 30.09 | temperature | 25 | 270 | < th | dose independent | rect. | 9 | 22 |
| 768 | 30.10 | wind | 9 | 270 | < th | dose dependent | rect. | 6 | 19 |
| 801 | 30.15 | atmosphere | 1015 | 270 | < th | dose dependent | rect. | 6 | 7 |
| 815 | 30.16 | wind | 9 | 270 | < th | dose dependent | rect. | 7 | 17 |
| 826 | 30.17 | temperature | 15 | 10 | > th | dose dependent | rect. | 6 | 22 |
| 838 | 30.19 | temperature | 25 | 90 | < th | dose independent | rect. | 3 | 6 |
| 883 | 30.22 | atmosphere | 1015 | 10 | < th | dose dependent | rect. | 8 | 6 |
| 910 | 30.25 | wind | 9 | 14400 | > th | dose independent | rect. | 12 | 1 |
| 951 | 30.28 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 3 |
| 993 | 30.32 | wind | 9 | 14400 | > th | dose dependent | rect. | 12 | 1 |