Os12g0577900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein prenyltransferase domain containing protein.
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Os12g0577900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein prenyltransferase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 247.9 | 0.74 | 7.65 | 0.198 | 0.412 | -1.19 | 0.294 | -2.02 | -0.584 | 3.24 | 21.58 | 1577 | -- | -- |
| 254.23 | 0.743 | 7.58 | 0.586 | 0.579 | -0.841 | 0.781 | -- | -0.552 | 2.67 | 22.2 | 782 | -- | -- |
| 248.16 | 0.734 | 7.66 | 0.192 | 0.415 | -1.19 | -- | -2.02 | -0.586 | 3.4 | 21.55 | 1578 | -- | -- |
| 251.68 | 0.739 | 7.59 | 0.572 | 0.461 | -0.874 | -- | -- | -0.466 | 1.9 | 22.45 | 725 | -- | -- |
| 257.05 | 0.747 | 7.65 | 0.262 | -- | -1.19 | -- | -1.92 | -0.562 | -- | 21.6 | 1736 | -- | -- |
| 290.52 | 0.799 | 7.66 | 0.293 | 0.404 | -- | 0.393 | -- | -0.771 | 3.17 | -- | -- | -- | -- |
| 291 | 0.799 | 7.66 | 0.285 | 0.409 | -- | -- | -- | -0.773 | 3.38 | -- | -- | -- | -- |
| 260.72 | 0.752 | 7.59 | 0.577 | -- | -0.868 | -- | -- | -0.475 | -- | 22.28 | 461 | -- | -- |
| 259.86 | 0.751 | 7.61 | -- | 0.445 | -0.807 | -- | -- | -0.551 | 2.05 | 22.44 | 689 | -- | -- |
| 300.4 | 0.81 | 7.66 | 0.302 | -- | -- | -- | -- | -0.762 | -- | -- | -- | -- | -- |
| 293.13 | 0.801 | 7.66 | -- | 0.414 | -- | -- | -- | -0.805 | 3.38 | -- | -- | -- | -- |
| 269.01 | 0.764 | 7.61 | -- | -- | -0.767 | -- | -- | -0.564 | -- | 22.37 | 433 | -- | -- |
| 302.8 | 0.812 | 7.66 | -- | -- | -- | -- | -- | -0.796 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 241.79 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 24 | 19 |
| 4 | 242.71 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 24 | 22 |
| 24 | 245.39 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 27 | 245.68 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 4 | 4 |
| 28 | 245.70 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 32 | 246.02 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 4 | 4 |
| 33 | 246.02 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 4 | 4 |
| 38 | 246.38 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 4 | 4 |
| 39 | 246.40 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 4 | 2 |
| 40 | 246.47 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 4 | 2 |
| 41 | 246.47 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 4 | 2 |
| 42 | 246.52 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 4 | 2 |
| 43 | 246.55 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 1 | 1 |
| 44 | 246.59 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 24 | 18 |
| 74 | 248.40 | wind | 3.0 | 14400 | < th | dose independent | rect. | 1 | 1 |
| 78 | 248.65 | wind | 3.0 | 14400 | > th | dose independent | rect. | 1 | 1 |
| 80 | 248.96 | temperature | 15.0 | 30 | > th | dose dependent | sin | 5 | NA |
| 100 | 249.52 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 101 | 249.52 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 112 | 249.67 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 2 | 10 |
| 117 | 249.86 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 23 | 11 |
| 130 | 250.20 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 13 | 9 |
| 155 | 250.68 | wind | 9.0 | 14400 | < th | dose dependent | rect. | 1 | 1 |
| 159 | 250.73 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 24 | 12 |
| 166 | 250.81 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 3 | 9 |
| 176 | 250.96 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 192 | 251.19 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 9 | 22 |
| 234 | 251.69 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 11 | 15 |
| 242 | 251.78 | temperature | 30.0 | 30 | < th | dose dependent | sin | 5 | NA |
| 279 | 252.04 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 13 | 23 |
| 282 | 252.05 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 15 | 21 |
| 289 | 252.08 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 15 | 23 |
| 293 | 252.10 | temperature | 25.0 | 1440 | < th | dose dependent | sin | 17 | NA |
| 295 | 252.11 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 3 | 9 |
| 296 | 252.11 | temperature | 25.0 | 270 | < th | dose dependent | sin | 6 | NA |
| 303 | 252.12 | temperature | 25.0 | 720 | < th | dose dependent | no | NA | NA |
| 347 | 252.40 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 15 | 17 |
| 363 | 252.47 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 5 | 23 |
| 375 | 252.53 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 20 | 7 |
| 422 | 252.74 | temperature | 25.0 | 720 | < th | dose dependent | sin | 10 | NA |
| 470 | 253.08 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 20 | 1 |
| 484 | 253.20 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 21 | 2 |
| 529 | 253.47 | temperature | 20.0 | 720 | > th | dose independent | rect. | 4 | 19 |
| 560 | 253.69 | temperature | 25.0 | 30 | < th | dose dependent | sin | 1 | NA |
| 584 | 253.86 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 4 | 10 |
| 585 | 253.86 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 22 | 18 |
| 594 | 253.92 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 4 | 12 |
| 647 | 254.23 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 21 | 10 |
| 699 | 254.59 | temperature | 25.0 | 90 | < th | dose independent | rect. | 24 | 17 |
| 709 | 254.63 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 3 | 13 |
| 721 | 254.68 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 24 | 3 |
| 722 | 254.69 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 3 | 13 |
| 724 | 254.69 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 3 | 13 |
| 742 | 254.80 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 743 | 254.80 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 774 | 254.96 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 3 | 11 |
| 776 | 254.96 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 21 | 13 |
| 784 | 254.99 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 2 | 14 |
| 786 | 255.00 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 3 | 11 |
| 787 | 255.00 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 3 | 11 |
| 792 | 255.03 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 794 | 255.04 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 1 | 1 |
| 807 | 255.15 | wind | 9.0 | 14400 | < th | dose independent | rect. | 6 | 7 |
| 819 | 255.20 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 833 | 255.26 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 18 | 22 |
| 843 | 255.30 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 4 | 3 |
| 884 | 255.51 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 21 | 2 |
| 892 | 255.54 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 894 | 255.54 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 7 | 1 |
| 895 | 255.54 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 17 | 23 |
| 912 | 255.60 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 938 | 255.72 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 3 | 19 |
| 945 | 255.75 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 23 | 8 |
| 964 | 255.82 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 2 | 1 |
| 969 | 255.87 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 3 | 3 |
| 981 | 255.92 | wind | 3.0 | 14400 | < th | dose independent | rect. | 23 | 8 |
| 994 | 255.98 | wind | 9.0 | 14400 | < th | dose independent | rect. | 10 | 3 |