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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0576700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Diphosphonucleotide phosphatase 1 precursor.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.1 (0.0575) R2 : 0.716
β1 : -6.99 (0.247) R2dD : 0.865 R2D : 0.0614
β2 : 1.7 (0.124) R2dC : 0.117 R2C : 0.0676
β3 : -3.35 (0.234) R2dE : 0.204 R2E : 0.0222
β4 : -2.38 (0.476) R2dD*C : 0.0159 R2D*C : -0.0392
β5 : 7.46 (0.71) R2dD*E : 0.146 R2D*E : -0.0894
γ1 : -0.651 (0.124) R2dN8 : 0.0285 R2N8 : -0.102
σ : 0.984
deviance : 438.99
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_____
C
peak time of C : 0.619
E
wheather : temperature
threshold : 19.4
memory length : 1746
response mode : < th
dose dependency : dose independent
G
type of G : sin
peak or start time of G : 5.94
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
438.99 0.984 6.1 -6.99 1.7 -3.35 -2.38 7.46 -0.651 0.619 19.4 1746 5.94 --
521.85 1.06 5.88 -6 1.67 -5.43 -3.06 -- -0.206 1.28 19.3 2040 8.86 --
457.23 0.996 6.09 -6.99 1.58 -3.42 -- 7.97 -0.647 0.756 19.4 2001 6.09 --
520.52 1.06 5.89 -6.52 1.39 -5.51 -- -- -0.48 0.517 19.4 2478 10.9 --
563.36 1.11 6.15 -7.29 -- -3.22 -- 7.95 -0.789 -- 19.5 2419 5.8 --
937.29 1.44 5.66 -3.79 1.58 -- -1.47 -- 0.574 0.512 -- -- -- --
946.29 1.44 5.66 -3.73 1.59 -- -- -- 0.583 0.344 -- -- -- --
636.12 1.17 5.88 -6.44 -- -5.37 -- -- -0.501 -- 19.49 2478 9.8 --
1166.99 1.59 5.62 -- 1.54 -3.39 -- -- 0.655 1.17 20.9 804 11.2 --
1104.76 1.55 5.63 -3.68 -- -- -- -- 0.608 -- -- -- -- --
1313.57 1.7 5.57 -- 1.54 -- -- -- 0.999 0.217 -- -- -- --
1295.73 1.68 5.65 -- -- -2.39 -- -- 0.536 -- 21.2 970 7.81 --
1461.94 1.78 5.54 -- -- -- -- -- 1.02 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 458.85 temperature 20 1440 > th dose independent rect. 21 16
3 459.15 temperature 20 1440 < th dose independent rect. 21 16
25 462.38 temperature 20 1440 < th dose independent sin 8 NA
30 462.67 temperature 20 1440 > th dose independent sin 11 NA
33 462.85 temperature 20 1440 > th dose independent rect. 17 14
43 463.48 temperature 20 1440 < th dose independent rect. 17 14
74 465.77 temperature 20 1440 > th dose independent rect. 21 4
87 466.66 temperature 20 1440 > th dose independent rect. 17 11
100 467.21 temperature 20 1440 > th dose independent rect. 20 6
107 467.44 temperature 20 1440 > th dose independent rect. 18 9
108 467.54 temperature 20 1440 < th dose independent rect. 21 4
142 469.30 temperature 20 1440 < th dose independent rect. 20 6
154 470.03 temperature 20 1440 < th dose independent rect. 19 8
184 471.60 temperature 20 1440 > th dose independent rect. 12 19
210 473.09 temperature 20 1440 < th dose independent rect. 12 19
360 481.08 temperature 20 1440 < th dose independent rect. 5 2
383 482.62 temperature 20 1440 > th dose independent rect. 5 2
392 483.27 temperature 20 1440 > th dose independent no NA NA
415 485.48 temperature 20 1440 < th dose independent no NA NA
423 486.16 temperature 20 1440 > th dose independent rect. 5 23
448 488.69 temperature 20 1440 > th dose independent rect. 3 23
451 488.77 temperature 20 1440 < th dose independent rect. 5 23
477 491.32 temperature 20 1440 < th dose independent rect. 3 23
561 499.49 temperature 25 1440 < th dose dependent rect. 19 9
593 501.54 temperature 25 1440 < th dose dependent rect. 18 17
596 501.65 temperature 25 1440 < th dose dependent rect. 21 2
616 502.72 temperature 25 1440 < th dose dependent sin 11 NA
796 513.07 humidity 90 14400 > th dose dependent rect. 23 17
867 516.76 temperature 20 1440 < th dose dependent rect. 3 2
894 518.04 temperature 25 1440 < th dose dependent rect. 1 3
901 518.45 humidity 90 14400 > th dose dependent sin 5 NA
933 519.73 temperature 10 1440 > th dose dependent rect. 21 9
962 520.56 humidity 90 14400 > th dose dependent rect. 5 2
975 520.80 temperature 10 1440 > th dose dependent rect. 1 4