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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0573600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, unclassifiable transcript.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.33 (0.0864) R2 : 0.392
β1 : -4.6 (0.345) R2dD : 0.305 R2D : 0.213
β2 : 1.93 (0.22) R2dC : 0.112 R2C : 0.0611
β3 : 1.24 (0.168) R2dE : 0.0817 R2E : 8.63e-05
β4 : -3.45 (0.911) R2dD*C : 0.021 R2D*C : 0.0263
β5 : -2.28 (0.711) R2dD*E : 0.0185 R2D*E : -0.0507
γ1 : -0.54 (0.189) R2dN8 : 0.0159 R2N8 : -0.027
σ : 1.6
deviance : 1156.35
__
_____
C
peak time of C : 8.76
E
wheather : temperature
threshold : 20.5
memory length : 100
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 16.2
open length of G : 17.1

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
1156.35 1.6 4.33 -4.6 1.93 1.24 -3.45 -2.28 -0.54 8.76 20.5 100 16.2 17.1
1182.03 1.6 4.3 -4.16 1.95 1.19 -2.81 -- -0.469 8.59 20.59 111 16.1 17.1
1192.45 1.61 4.31 -4.59 1.94 1.24 -- -1.6 -0.495 8.74 20.5 85 16.3 17.2
1204.5 1.62 4.28 -4.22 1.95 1.24 -- -- -0.411 8.76 20.57 119 15.9 17.1
1339.9 1.7 4.36 -4.5 -- 1.28 -- -1.51 -0.442 -- 20.5 158 17.8 16.9
1278.05 1.68 4.23 -3.93 1.83 -- -3.15 -- -0.165 7.11 -- -- -- --
1303.62 1.69 4.23 -4 1.83 -- -- -- -0.16 6.91 -- -- -- --
1251.26 1.65 4.45 -4.07 -- 1.43 -- -- -0.41 -- 20.04 201 1.86 7.51
1675.27 1.91 4.23 -- 2.03 1.2 -- -- -0.0498 8.67 20.51 134 15.8 17.2
1479.41 1.8 4.27 -3.96 -- -- -- -- -0.126 -- -- -- -- --
1725.44 1.94 4.13 -- 1.79 -- -- -- 0.285 7.05 -- -- -- --
1671.98 1.9 4.24 -- -- 1.77 -- -- 0.0602 -- 19.88 175 2.25 7.28
1893.47 2.03 4.17 -- -- -- -- -- 0.314 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 1160.95 temperature 20.0 90 > th dose independent rect. 16 17
2 1167.24 temperature 25.0 30 < th dose independent rect. 22 6
12 1171.27 temperature 20.0 90 > th dose dependent rect. 16 17
14 1172.56 wind 1.0 30 > th dose independent rect. 23 17
25 1176.70 temperature 30.0 90 < th dose dependent rect. 23 4
34 1177.87 temperature 15.0 270 > th dose independent rect. 23 1
37 1178.37 temperature 10.0 270 > th dose dependent rect. 15 17
38 1178.38 temperature 15.0 30 > th dose independent rect. 23 5
39 1179.01 temperature 25.0 270 < th dose independent rect. 23 1
40 1179.06 temperature 20.0 10 > th dose dependent rect. 16 18
41 1179.25 wind 7.0 30 < th dose independent rect. 23 5
47 1179.83 temperature 25.0 270 > th dose independent rect. 14 8
49 1179.97 atmosphere 1000.0 30 > th dose independent rect. 4 19
52 1180.32 precipitation 0.1 30 < th dose independent rect. 23 5
53 1180.32 precipitation 0.1 30 < th dose dependent rect. 23 5
58 1180.59 humidity 50.0 30 > th dose independent rect. 23 5
61 1180.59 atmosphere 995.0 30 > th dose independent rect. 23 5
62 1180.59 radiation 1.0 30 < th dose independent rect. 23 5
67 1180.59 temperature 10.0 30 > th dose independent rect. 4 19
69 1180.59 atmosphere 1015.0 30 < th dose independent rect. 4 19
70 1180.59 radiation 1.0 30 < th dose dependent rect. 23 5
76 1180.67 precipitation 0.1 30 < th dose independent rect. 4 19
77 1180.67 precipitation 0.1 30 < th dose dependent rect. 4 19
79 1180.97 temperature 10.0 270 > th dose dependent rect. 14 8
84 1181.07 wind 1.0 270 > th dose independent rect. 23 1
90 1181.70 wind 7.0 270 < th dose independent rect. 23 1
91 1181.84 wind 9.0 270 < th dose independent rect. 10 15
95 1181.88 humidity 50.0 270 > th dose independent rect. 23 1
98 1181.88 atmosphere 995.0 270 > th dose independent rect. 23 1
99 1181.88 radiation 1.0 270 < th dose independent rect. 23 1
104 1181.88 temperature 10.0 270 > th dose independent rect. 24 23
105 1181.88 radiation 1.0 270 < th dose dependent rect. 23 1
111 1181.93 precipitation 0.1 270 < th dose independent rect. 23 1
113 1181.93 precipitation 0.1 270 < th dose dependent rect. 23 1
153 1183.87 temperature 30.0 270 < th dose dependent rect. 23 1
154 1183.96 wind 9.0 1440 < th dose independent rect. 24 4
165 1184.60 temperature 30.0 270 < th dose dependent rect. 21 5
180 1185.42 wind 7.0 270 < th dose independent rect. 21 17
183 1185.67 temperature 30.0 10 < th dose independent rect. 4 19
189 1186.02 temperature 25.0 270 < th dose independent rect. 19 7
192 1186.20 precipitation 0.1 270 < th dose independent rect. 24 23
193 1186.20 precipitation 0.1 270 < th dose dependent rect. 24 23
199 1186.64 temperature 20.0 90 > th dose dependent rect. 4 1
200 1186.85 wind 9.0 30 < th dose independent rect. 4 19
201 1186.86 wind 1.0 90 < th dose independent rect. 4 1
215 1188.09 temperature 20.0 30 > th dose independent rect. 16 7
219 1188.17 temperature 15.0 10 > th dose independent rect. 23 17
221 1188.24 radiation 10.0 30 < th dose dependent rect. 4 19
224 1188.38 wind 1.0 30 > th dose independent rect. 23 5
226 1188.51 atmosphere 1015.0 270 < th dose independent rect. 24 22
229 1188.68 radiation 1.0 10 < th dose dependent rect. 23 18
237 1189.31 wind 1.0 270 < th dose dependent rect. 4 1
240 1189.48 wind 9.0 10 < th dose independent rect. 23 17
251 1190.09 temperature 10.0 10 > th dose dependent rect. 16 7
252 1190.19 temperature 25.0 270 < th dose independent rect. 11 15
263 1190.70 humidity 50.0 30 > th dose independent rect. 4 19
270 1190.95 temperature 20.0 90 > th dose independent rect. 3 6
273 1190.99 atmosphere 1015.0 270 < th dose independent rect. 14 7
274 1191.04 wind 9.0 30 < th dose dependent rect. 23 5
281 1191.17 temperature 15.0 270 > th dose dependent rect. 15 5
291 1191.46 atmosphere 995.0 10 > th dose independent rect. 16 7
301 1191.67 precipitation 0.1 10 < th dose independent rect. 23 17
302 1191.67 radiation 40.0 30 < th dose dependent rect. 16 7
303 1191.67 precipitation 0.1 10 < th dose dependent rect. 23 17
307 1191.72 temperature 20.0 90 > th dose independent rect. 4 1
308 1191.78 precipitation 0.1 10 < th dose independent rect. 16 7
309 1191.78 atmosphere 995.0 270 > th dose independent rect. 24 23
310 1191.78 precipitation 0.1 10 < th dose dependent rect. 16 7
311 1191.87 temperature 10.0 10 > th dose independent rect. 16 7
313 1191.87 atmosphere 1010.0 10 < th dose independent rect. 16 7
315 1191.87 radiation 40.0 10 < th dose independent rect. 16 7
338 1192.61 radiation 20.0 10 < th dose independent rect. 16 7
339 1192.66 atmosphere 995.0 10 > th dose independent rect. 23 17
343 1192.75 atmosphere 1015.0 10 < th dose dependent rect. 16 7
401 1193.53 temperature 20.0 270 > th dose independent rect. 15 4
408 1193.62 wind 9.0 270 < th dose dependent rect. 23 1
445 1194.22 humidity 50.0 30 > th dose independent rect. 23 17
446 1194.26 humidity 50.0 270 > th dose dependent rect. 1 9
451 1194.43 wind 1.0 30 > th dose independent rect. 16 7
452 1194.43 atmosphere 995.0 30 > th dose dependent rect. 23 5
456 1194.51 atmosphere 1000.0 270 > th dose independent rect. 1 8
461 1194.62 humidity 50.0 270 > th dose dependent rect. 23 1
483 1194.99 temperature 10.0 270 > th dose dependent rect. 1 8
484 1194.99 radiation 1.0 10 < th dose dependent rect. 23 15
487 1195.05 wind 1.0 270 > th dose independent rect. 10 15
493 1195.22 humidity 90.0 270 < th dose independent rect. 15 4
494 1195.27 atmosphere 995.0 270 > th dose independent rect. 14 7
495 1195.32 precipitation 0.1 270 < th dose independent rect. 21 17
496 1195.32 precipitation 0.1 270 < th dose dependent rect. 21 17
498 1195.40 humidity 90.0 90 > th dose independent rect. 4 1
499 1195.57 temperature 10.0 270 > th dose independent rect. 1 9
501 1195.57 atmosphere 1015.0 270 < th dose independent rect. 1 9
502 1195.57 temperature 10.0 270 > th dose independent rect. 10 15
503 1195.58 humidity 50.0 270 > th dose independent rect. 1 9
504 1195.59 humidity 50.0 30 > th dose dependent rect. 23 5
511 1195.74 wind 9.0 30 < th dose independent rect. 16 7
514 1195.89 humidity 70.0 10 > th dose independent rect. 16 7
518 1195.92 radiation 40.0 270 < th dose independent rect. 1 9
521 1195.98 wind 9.0 270 < th dose independent rect. 1 9
563 1196.27 precipitation 0.1 270 < th dose independent rect. 14 7
564 1196.27 precipitation 0.1 270 < th dose dependent rect. 14 7
565 1196.30 precipitation 0.1 270 < th dose independent rect. 1 9
566 1196.30 precipitation 0.1 270 < th dose dependent rect. 1 9
579 1196.44 precipitation 0.1 270 < th dose independent rect. 9 16
580 1196.44 precipitation 0.1 270 < th dose dependent rect. 9 16
582 1196.46 temperature 10.0 270 > th dose independent rect. 14 7
583 1196.46 temperature 10.0 270 > th dose independent rect. 21 17
584 1196.46 atmosphere 995.0 270 > th dose independent rect. 21 17
593 1196.58 humidity 50.0 270 > th dose independent rect. 21 17
598 1196.65 humidity 50.0 270 > th dose independent rect. 14 7
608 1196.89 temperature 30.0 10 < th dose dependent rect. 20 8
616 1197.08 radiation 1.0 30 < th dose independent rect. 4 19
623 1197.30 wind 1.0 270 > th dose independent rect. 14 7
635 1197.48 humidity 50.0 90 > th dose dependent rect. 3 8
643 1197.59 temperature 20.0 10 > th dose dependent sin 11 NA
645 1197.63 temperature 30.0 270 < th dose independent rect. 1 8
647 1197.64 atmosphere 1000.0 270 > th dose independent rect. 3 17
670 1197.68 wind 7.0 270 < th dose independent rect. 8 7
725 1198.25 humidity 90.0 270 < th dose independent rect. 14 6
779 1199.26 wind 1.0 90 < th dose dependent rect. 4 10
783 1199.32 wind 1.0 90 < th dose dependent rect. 4 19
785 1199.34 radiation 1.0 10 < th dose dependent rect. 23 13
789 1199.36 radiation 40.0 30 < th dose dependent rect. 14 9
800 1199.45 humidity 80.0 90 > th dose dependent rect. 4 1
803 1199.48 wind 1.0 90 < th dose dependent rect. 4 17
822 1199.75 wind 1.0 90 < th dose dependent rect. 4 6
823 1199.75 temperature 10.0 90 > th dose dependent rect. 3 6
829 1199.88 wind 1.0 270 > th dose independent rect. 20 6
838 1199.93 wind 1.0 90 < th dose dependent rect. 4 13
844 1199.99 temperature 30.0 10 < th dose independent rect. 16 7
882 1200.30 atmosphere 995.0 270 > th dose independent rect. 9 16
891 1200.33 atmosphere 995.0 270 > th dose dependent rect. 23 1
902 1200.44 wind 1.0 90 < th dose dependent rect. 4 3
926 1200.72 atmosphere 1015.0 270 < th dose dependent rect. 14 7
937 1200.86 temperature 10.0 270 > th dose independent rect. 20 7
939 1200.86 humidity 50.0 270 > th dose independent rect. 20 7
942 1200.86 atmosphere 995.0 270 > th dose independent rect. 20 7
943 1200.86 radiation 1.0 270 < th dose independent rect. 20 7
949 1200.86 temperature 10.0 270 > th dose independent rect. 3 17
950 1200.86 atmosphere 1015.0 270 < th dose independent rect. 3 17
951 1200.86 radiation 1.0 270 < th dose dependent rect. 20 7
970 1200.97 atmosphere 1015.0 90 < th dose independent rect. 16 17
974 1201.01 precipitation 0.1 270 < th dose independent rect. 20 7
975 1201.01 precipitation 0.1 270 < th dose dependent rect. 20 7
979 1201.12 wind 9.0 270 < th dose independent rect. 20 7
980 1201.14 wind 9.0 10 < th dose independent rect. 10 18
984 1201.17 temperature 20.0 720 > th dose dependent rect. 17 6