Os12g0573400 - FiT-DB

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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0573400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :

log2(Expression) ~ Norm(μ, σ²)

μ = α + β₁D + β₂C + β₃E + β₄D*C + β₅D*E + γ₁N8

par.		value	(S.E.)
α	:	4.65	(0.0345)	R²	:	0.418
β₁	:	-1.25	(0.136)	R²_dD	:	0.131	R²_D	:	0.213
β₂	:	0.746	(0.0879)	R²_dC	:	0.0931	R²_C	:	0.107
β₃	:	-1.18	(0.148)	R²_dE	:	0.0957	R²_E	:	0.186
β₄	:	--	(--)	R²_dD*C	:	--	R²_D*C	:	--
β₅	:	--	(--)	R²_dD*E	:	--	R²_D*E	:	--
γ₁	:	0.0838	(0.0745)	R²_dN8	:	0.00222	R²_N8	:	0.00491
σ	:	0.642
deviance	:	190.01
__

_____

C
peak time of C	:	7.89
E
wheather	:	wind
threshold	:	7.258
memory length	:	4192
response mode	:	< th
dose dependency	:	dose independent
G
type of G	:	no
peak or start time of G	:	--
open length of G	:	--

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose independent, type of G = no)

deviance	σ	α	β₁	β₂	β₃	β₄	β₅	γ₁	peak time of C	threshold	memory length	peak or start time of G	open length of G
184.15	0.638	4.65	-1.2	0.75	-1.21	-1.41	-0.225	0.0883	7.86	7	4191	--	--
184.17	0.632	4.65	-1.21	0.75	-1.17	-1.42	--	0.0924	7.87	7.002	4191	--	--
189.95	0.642	4.65	-1.24	0.747	-1.23	--	-0.291	0.0902	7.91	7.1	4191	--	--
190.01	0.642	4.65	-1.25	0.746	-1.18	--	--	0.0838	7.89	7.258	4192	--	--
217.93	0.688	4.68	-1.25	--	-1.27	--	-0.186	0.0586	--	8.2	4194	--	--
210.03	0.679	4.67	-1.63	0.814	--	-1.49	--	-0.0228	7.72	--	--	--	--
216.28	0.689	4.67	-1.66	0.812	--	--	--	-0.0203	7.85	--	--	--	--
218.06	0.688	4.68	-1.26	--	-1.22	--	--	0.0453	--	8.14	4194	--	--
225.04	0.699	4.61	--	0.705	-1.67	--	--	0.253	7.82	7.436	4189	--	--
252.04	0.742	4.69	-1.65	--	--	--	--	-0.00917	--	--	--	--	--
289.24	0.796	4.63	--	0.801	--	--	--	0.165	7.99	--	--	--	--
250.79	0.738	4.64	--	--	-1.74	--	--	0.227	--	7.583	4271	--	--
324.24	0.84	4.65	--	--	--	--	--	0.174	--	--	--	--	--

Results of the grid search

Summarized heatmap of deviance

Histogram

Local optima within top1000 grid-points

rank	deviance	wheather	threshold	memory length	response mode	dose dependency	type of G	peak or start time of G	open length of G
1	173.49	temperature	30.0	90	< th	dose dependent	rect.	5	2
2	174.73	radiation	20.0	90	< th	dose dependent	rect.	5	5
4	174.89	wind	1.0	270	> th	dose independent	rect.	4	1
5	174.96	wind	1.0	90	> th	dose independent	rect.	4	4
11	175.57	radiation	40.0	30	< th	dose dependent	rect.	5	13
12	175.83	temperature	25.0	90	< th	dose independent	rect.	5	2
14	176.22	radiation	10.0	90	< th	dose dependent	rect.	5	8
31	177.94	radiation	1.0	270	< th	dose independent	rect.	4	2
38	178.35	temperature	30.0	270	< th	dose dependent	rect.	3	3
46	178.75	temperature	30.0	30	< th	dose dependent	rect.	5	4
47	178.75	humidity	70.0	90	> th	dose dependent	rect.	5	4
49	178.77	radiation	1.0	270	< th	dose independent	rect.	3	6
53	178.84	radiation	10.0	270	< th	dose dependent	rect.	3	5
60	178.96	radiation	1.0	270	< th	dose independent	rect.	3	10
65	179.11	wind	5.0	90	< th	dose independent	rect.	18	10
71	179.23	radiation	20.0	90	< th	dose independent	rect.	4	7
73	179.30	precipitation	0.1	270	< th	dose independent	rect.	6	21
74	179.30	precipitation	0.1	270	< th	dose dependent	rect.	6	21
76	179.32	radiation	20.0	90	< th	dose independent	rect.	4	5
81	179.39	wind	9.0	1440	< th	dose independent	rect.	6	3
82	179.39	temperature	10.0	1440	> th	dose independent	rect.	6	3
85	179.39	humidity	50.0	1440	> th	dose independent	rect.	6	3
87	179.39	atmosphere	995.0	1440	> th	dose independent	rect.	6	3
88	179.39	atmosphere	1015.0	1440	< th	dose independent	rect.	6	3
90	179.39	temperature	10.0	1440	> th	dose independent	rect.	9	21
95	179.47	atmosphere	1015.0	270	< th	dose independent	rect.	6	21
107	179.63	humidity	80.0	90	> th	dose independent	rect.	5	4
116	179.77	radiation	20.0	90	< th	dose independent	rect.	4	14
120	179.85	wind	9.0	270	< th	dose independent	rect.	6	21
129	180.01	wind	9.0	30	< th	dose dependent	rect.	8	21
146	180.25	radiation	10.0	270	< th	dose dependent	rect.	3	10
150	180.35	wind	9.0	270	< th	dose independent	rect.	3	3
151	180.35	temperature	10.0	270	> th	dose independent	rect.	3	3
153	180.35	temperature	30.0	270	< th	dose independent	rect.	3	3
154	180.35	humidity	50.0	270	> th	dose independent	rect.	3	3
157	180.35	atmosphere	995.0	270	> th	dose independent	rect.	3	3
158	180.35	atmosphere	1015.0	270	< th	dose independent	rect.	3	3
159	180.35	radiation	20.0	270	< th	dose independent	rect.	3	3
162	180.35	temperature	10.0	270	> th	dose independent	rect.	6	21
168	180.39	radiation	30.0	270	< th	dose dependent	rect.	2	7
182	180.59	temperature	10.0	1440	> th	dose independent	rect.	5	5
185	180.59	atmosphere	995.0	1440	> th	dose independent	rect.	5	5
186	180.59	atmosphere	1015.0	1440	< th	dose independent	rect.	5	5
187	180.59	temperature	10.0	1440	> th	dose independent	rect.	10	19
202	180.65	atmosphere	1015.0	90	< th	dose independent	rect.	8	20
215	180.70	temperature	30.0	1440	< th	dose independent	rect.	6	2
256	180.90	wind	9.0	90	< th	dose dependent	rect.	18	10
276	181.15	wind	5.0	90	< th	dose independent	rect.	8	20
279	181.18	wind	1.0	270	> th	dose independent	rect.	2	5
296	181.38	precipitation	0.1	270	< th	dose independent	rect.	3	3
297	181.38	precipitation	0.1	270	< th	dose dependent	rect.	3	3
367	181.67	humidity	50.0	30	> th	dose dependent	rect.	5	13
377	181.72	precipitation	0.1	90	< th	dose independent	rect.	5	2
379	181.72	precipitation	0.1	90	< th	dose dependent	rect.	5	2
395	181.82	humidity	50.0	270	> th	dose dependent	rect.	3	3
403	181.90	radiation	20.0	270	< th	dose independent	rect.	2	7
420	182.08	wind	7.0	4320	< th	dose independent	rect.	8	11
424	182.11	wind	7.0	4320	> th	dose independent	rect.	7	12
432	182.16	wind	9.0	30	< th	dose dependent	rect.	20	9
453	182.26	wind	1.0	90	> th	dose independent	rect.	4	15
467	182.30	radiation	1.0	270	< th	dose independent	rect.	3	15
494	182.37	wind	7.0	4320	< th	dose independent	rect.	1	18
500	182.39	wind	7.0	4320	> th	dose independent	rect.	1	18
510	182.42	wind	7.0	4320	< th	dose independent	sin	1	NA
516	182.43	wind	7.0	4320	> th	dose independent	sin	1	NA
544	182.51	atmosphere	1015.0	90	< th	dose dependent	rect.	5	2
583	182.63	wind	9.0	90	< th	dose independent	rect.	8	20
593	182.66	wind	9.0	90	< th	dose dependent	rect.	5	2
598	182.67	atmosphere	995.0	270	> th	dose independent	rect.	6	21
637	182.79	temperature	10.0	1440	> th	dose independent	rect.	19	10
640	182.79	temperature	30.0	1440	< th	dose independent	rect.	19	10
644	182.79	humidity	50.0	1440	> th	dose independent	rect.	19	10
646	182.79	atmosphere	995.0	1440	> th	dose independent	rect.	19	10
647	182.79	radiation	20.0	1440	< th	dose independent	rect.	19	10
659	182.79	temperature	10.0	1440	> th	dose independent	rect.	5	14
694	182.91	atmosphere	995.0	270	> th	dose dependent	rect.	3	3
745	183.18	wind	7.0	4320	< th	dose independent	rect.	11	3
763	183.22	radiation	40.0	30	< th	dose dependent	rect.	5	17
766	183.23	wind	9.0	270	< th	dose independent	rect.	2	5
767	183.23	temperature	10.0	270	> th	dose independent	rect.	2	5
769	183.23	temperature	30.0	270	< th	dose independent	rect.	2	5
770	183.23	humidity	50.0	270	> th	dose independent	rect.	2	5
772	183.23	atmosphere	995.0	270	> th	dose independent	rect.	2	5
773	183.23	atmosphere	1015.0	270	< th	dose independent	rect.	2	5
798	183.31	wind	7.0	4320	> th	dose independent	rect.	11	3
804	183.32	wind	5.0	4320	> th	dose dependent	rect.	11	3
817	183.39	temperature	10.0	1440	> th	dose independent	rect.	21	9
820	183.39	temperature	30.0	1440	< th	dose independent	rect.	21	9
824	183.39	humidity	50.0	1440	> th	dose independent	rect.	21	9
830	183.39	atmosphere	995.0	1440	> th	dose independent	rect.	21	9
831	183.39	radiation	20.0	1440	< th	dose independent	rect.	21	9
848	183.42	wind	1.0	90	> th	dose independent	rect.	8	20
880	183.58	wind	5.0	90	< th	dose independent	rect.	11	17
892	183.60	atmosphere	1015.0	30	< th	dose independent	rect.	20	9