Os12g0573200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : GRAS transcription factor domain containing protein.
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Os12g0573200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : GRAS transcription factor domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 35.7 | 0.281 | 11.7 | 1.84 | 0.672 | -0.539 | 0.254 | 1.08 | 0.451 | 22.2 | 25.7 | 1320 | -- | -- |
| 36.14 | 0.28 | 11.7 | 1.57 | 0.645 | -0.425 | 0.346 | -- | 0.391 | 22.3 | 25.57 | 1334 | -- | -- |
| 35.95 | 0.279 | 11.7 | 1.85 | 0.671 | -0.543 | -- | 1.15 | 0.456 | 22.3 | 25.68 | 1319 | -- | -- |
| 36.38 | 0.281 | 11.7 | 1.56 | 0.664 | -0.423 | -- | -- | 0.381 | 22.3 | 25.8 | 1331 | -- | -- |
| 61.17 | 0.366 | 11.7 | 1.66 | -- | -0.628 | -- | 1.83 | 0.415 | -- | 25.67 | 1494 | -- | -- |
| 43.59 | 0.31 | 11.7 | 1.42 | 0.634 | -- | 0.264 | -- | 0.35 | 21.9 | -- | -- | -- | -- |
| 43.85 | 0.31 | 11.7 | 1.41 | 0.632 | -- | -- | -- | 0.349 | 22 | -- | -- | -- | -- |
| 61.77 | 0.366 | 11.7 | 1.56 | -- | -0.404 | -- | -- | 0.379 | -- | 26.19 | 5850 | -- | -- |
| 94.47 | 0.453 | 11.8 | -- | 0.651 | -0.219 | -- | -- | 0.134 | 22.1 | 34.76 | 977 | -- | -- |
| 67.9 | 0.385 | 11.7 | 1.41 | -- | -- | -- | -- | 0.349 | -- | -- | -- | -- | -- |
| 95.96 | 0.458 | 11.8 | -- | 0.638 | -- | -- | -- | 0.192 | 22.2 | -- | -- | -- | -- |
| 91.74 | 0.446 | 11.8 | -- | -- | 0.864 | -- | -- | -0.0664 | -- | 6.051 | 47520 | -- | -- |
| 120.62 | 0.513 | 11.7 | -- | -- | -- | -- | -- | 0.192 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 34.83 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 2 | 34.87 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 3 |
| 3 | 34.87 | wind | 9 | 43200 | < th | dose independent | rect. | 19 | 3 |
| 4 | 34.90 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 3 |
| 8 | 35.03 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 4 |
| 11 | 35.08 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 1 |
| 13 | 35.09 | radiation | 10 | 1440 | > th | dose independent | rect. | 9 | 22 |
| 16 | 35.14 | wind | 9 | 43200 | > th | dose independent | rect. | 17 | 5 |
| 19 | 35.17 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 14 |
| 24 | 35.20 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 9 |
| 25 | 35.21 | wind | 9 | 43200 | < th | dose independent | rect. | 17 | 4 |
| 29 | 35.21 | humidity | 60 | 1440 | > th | dose dependent | rect. | 11 | 10 |
| 30 | 35.22 | wind | 7 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 33 | 35.23 | humidity | 80 | 1440 | > th | dose independent | rect. | 7 | 14 |
| 42 | 35.27 | humidity | 80 | 1440 | < th | dose independent | sin | 0 | NA |
| 47 | 35.28 | wind | 9 | 43200 | < th | dose independent | rect. | 17 | 6 |
| 50 | 35.28 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 9 |
| 51 | 35.29 | humidity | 80 | 1440 | > th | dose independent | sin | 23 | NA |
| 61 | 35.31 | humidity | 70 | 14400 | < th | dose independent | rect. | 19 | 1 |
| 79 | 35.34 | humidity | 80 | 1440 | > th | dose independent | rect. | 7 | 9 |
| 81 | 35.34 | humidity | 70 | 14400 | < th | dose independent | rect. | 19 | 12 |
| 88 | 35.34 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 19 |
| 95 | 35.36 | radiation | 10 | 1440 | > th | dose independent | rect. | 9 | 9 |
| 148 | 35.42 | humidity | 80 | 1440 | < th | dose independent | rect. | 11 | 10 |
| 149 | 35.42 | temperature | 10 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 180 | 35.45 | humidity | 80 | 1440 | > th | dose independent | rect. | 11 | 10 |
| 193 | 35.46 | humidity | 70 | 1440 | > th | dose dependent | rect. | 11 | 3 |
| 222 | 35.49 | radiation | 10 | 1440 | < th | dose dependent | sin | 17 | NA |
| 234 | 35.50 | radiation | 10 | 1440 | < th | dose dependent | rect. | 13 | 5 |
| 300 | 35.57 | radiation | 10 | 1440 | > th | dose independent | sin | 19 | NA |
| 307 | 35.57 | humidity | 60 | 720 | > th | dose dependent | sin | 16 | NA |
| 320 | 35.58 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 6 |
| 354 | 35.59 | wind | 9 | 43200 | > th | dose independent | rect. | 17 | 8 |
| 360 | 35.59 | humidity | 60 | 1440 | > th | dose dependent | sin | 19 | NA |
| 364 | 35.59 | humidity | 90 | 1440 | < th | dose dependent | rect. | 13 | 8 |
| 366 | 35.59 | humidity | 50 | 720 | > th | dose dependent | rect. | 15 | 10 |
| 373 | 35.59 | radiation | 10 | 1440 | < th | dose dependent | rect. | 13 | 14 |
| 390 | 35.61 | wind | 9 | 43200 | < th | dose independent | rect. | 17 | 8 |
| 407 | 35.61 | temperature | 25 | 1440 | > th | dose dependent | sin | 20 | NA |
| 415 | 35.61 | humidity | 90 | 1440 | < th | dose dependent | rect. | 11 | 10 |
| 425 | 35.62 | humidity | 70 | 14400 | > th | dose independent | rect. | 19 | 2 |
| 443 | 35.63 | humidity | 70 | 14400 | > th | dose independent | rect. | 19 | 12 |
| 470 | 35.64 | humidity | 50 | 1440 | > th | dose dependent | rect. | 13 | 4 |
| 497 | 35.66 | humidity | 80 | 1440 | > th | dose independent | rect. | 11 | 4 |
| 502 | 35.66 | humidity | 70 | 14400 | > th | dose independent | rect. | 19 | 9 |
| 615 | 35.70 | humidity | 90 | 1440 | < th | dose dependent | rect. | 11 | 17 |
| 646 | 35.72 | humidity | 50 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 660 | 35.73 | humidity | 80 | 1440 | < th | dose independent | rect. | 11 | 4 |
| 724 | 35.75 | humidity | 90 | 1440 | < th | dose dependent | rect. | 13 | 15 |
| 843 | 35.81 | humidity | 90 | 1440 | < th | dose dependent | sin | 18 | NA |
| 908 | 35.84 | wind | 9 | 43200 | < th | dose independent | rect. | 17 | 13 |
| 989 | 35.88 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 21 |