Os12g0573000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
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Os12g0573000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 81.84 | 0.425 | 8.39 | -0.689 | 1.23 | 1.07 | 0.101 | -0.0608 | -0.172 | 9 | 21.44 | 1004 | -- | -- |
| 81.81 | 0.421 | 8.39 | -0.672 | 1.24 | 1.06 | 0.116 | -- | -0.172 | 8.99 | 21.51 | 978 | -- | -- |
| 81.81 | 0.421 | 8.39 | -0.694 | 1.24 | 1.07 | -- | -0.108 | -0.172 | 8.99 | 21.45 | 969 | -- | -- |
| 81.85 | 0.421 | 8.39 | -0.664 | 1.25 | 1.07 | -- | -- | -0.168 | 8.98 | 21.5 | 968 | -- | -- |
| 155.42 | 0.581 | 8.44 | -0.723 | -- | 0.988 | -- | -0.284 | -0.154 | -- | 21.8 | 1518 | -- | -- |
| 120.01 | 0.514 | 8.32 | -0.251 | 1.11 | -- | 0.103 | -- | 0.139 | 8.67 | -- | -- | -- | -- |
| 120.04 | 0.513 | 8.32 | -0.248 | 1.1 | -- | -- | -- | 0.139 | 8.66 | -- | -- | -- | -- |
| 154.81 | 0.579 | 8.42 | -0.695 | -- | 1.07 | -- | -- | -0.153 | -- | 21.54 | 1500 | -- | -- |
| 91.66 | 0.446 | 8.37 | -- | 1.24 | 0.913 | -- | -- | -0.0854 | 8.94 | 21.9 | 989 | -- | -- |
| 188.95 | 0.642 | 8.35 | -0.245 | -- | -- | -- | -- | 0.149 | -- | -- | -- | -- | -- |
| 121.67 | 0.516 | 8.32 | -- | 1.1 | -- | -- | -- | 0.167 | 8.68 | -- | -- | -- | -- |
| 164.65 | 0.598 | 8.4 | -- | -- | 0.815 | -- | -- | -0.0542 | -- | 22.09 | 1496 | -- | -- |
| 190.54 | 0.644 | 8.35 | -- | -- | -- | -- | -- | 0.176 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 77.66 | temperature | 25 | 720 | < th | dose dependent | sin | 5 | NA |
| 3 | 78.00 | temperature | 25 | 720 | < th | dose dependent | rect. | 1 | 14 |
| 6 | 78.24 | temperature | 25 | 720 | < th | dose dependent | rect. | 23 | 15 |
| 7 | 78.24 | temperature | 30 | 10 | < th | dose dependent | rect. | 24 | 18 |
| 13 | 78.33 | temperature | 15 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 14 | 78.36 | temperature | 15 | 720 | > th | dose dependent | rect. | 3 | 6 |
| 17 | 78.45 | temperature | 30 | 10 | < th | dose dependent | sin | 2 | NA |
| 20 | 78.47 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 18 |
| 23 | 78.51 | temperature | 30 | 90 | < th | dose dependent | rect. | 23 | 20 |
| 25 | 78.56 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 18 |
| 36 | 78.84 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 16 |
| 43 | 78.95 | temperature | 15 | 90 | > th | dose dependent | rect. | 6 | 18 |
| 46 | 79.00 | temperature | 10 | 90 | > th | dose dependent | rect. | 3 | 23 |
| 71 | 79.36 | temperature | 15 | 10 | > th | dose dependent | sin | 2 | NA |
| 73 | 79.39 | temperature | 30 | 90 | < th | dose dependent | rect. | 23 | 22 |
| 94 | 79.61 | temperature | 15 | 270 | > th | dose dependent | rect. | 4 | 18 |
| 101 | 79.71 | temperature | 15 | 720 | > th | dose dependent | sin | 6 | NA |
| 127 | 79.90 | temperature | 30 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 137 | 79.99 | temperature | 30 | 90 | < th | dose dependent | rect. | 1 | 16 |
| 169 | 80.32 | temperature | 30 | 10 | < th | dose dependent | rect. | 24 | 16 |
| 179 | 80.44 | temperature | 10 | 720 | > th | dose dependent | rect. | 20 | 15 |
| 193 | 80.55 | temperature | 30 | 10 | < th | dose dependent | rect. | 2 | 16 |
| 210 | 80.72 | temperature | 30 | 10 | < th | dose dependent | rect. | 22 | 23 |
| 237 | 80.89 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 16 |
| 250 | 81.00 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 18 |
| 276 | 81.22 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 10 |
| 354 | 81.81 | temperature | 30 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 361 | 81.92 | temperature | 25 | 720 | < th | dose dependent | rect. | 5 | 2 |
| 369 | 81.98 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 393 | 82.16 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 418 | 82.31 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 432 | 82.40 | temperature | 30 | 10 | < th | dose dependent | rect. | 2 | 14 |
| 444 | 82.46 | temperature | 30 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 465 | 82.59 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 472 | 82.63 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 498 | 82.83 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 548 | 83.13 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 655 | 83.89 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 658 | 83.90 | temperature | 30 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 668 | 83.95 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 800 | 84.72 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 13 |
| 837 | 85.02 | temperature | 30 | 90 | < th | dose dependent | rect. | 9 | 10 |
| 970 | 85.73 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 995 | 85.87 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 8 |