Os12g0572000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Rough sheath 2.
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Os12g0572000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Rough sheath 2.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 195.46 | 0.657 | 6.59 | -2.17 | 0.597 | 0.949 | -0.106 | -3.41 | -0.696 | 7.13 | 18.39 | 5824 | -- | -- |
| 202.56 | 0.663 | 6.48 | -1.54 | 0.581 | 1.32 | -0.339 | -- | -0.596 | 7.62 | 11.01 | 11305 | -- | -- |
| 195.49 | 0.651 | 6.59 | -2.17 | 0.597 | 0.949 | -- | -3.4 | -0.694 | 7.07 | 18.4 | 5822 | -- | -- |
| 202.61 | 0.663 | 6.48 | -1.52 | 0.593 | 1.3 | -- | -- | -0.598 | 7.26 | 10.43 | 11339 | -- | -- |
| 214.21 | 0.682 | 6.6 | -2.15 | -- | 0.97 | -- | -3.33 | -0.682 | -- | 18.24 | 5769 | -- | -- |
| 230.04 | 0.711 | 6.38 | -0.691 | 0.608 | -- | -0.165 | -- | -0.169 | 7.06 | -- | -- | -- | -- |
| 230.1 | 0.71 | 6.38 | -0.695 | 0.608 | -- | -- | -- | -0.168 | 6.96 | -- | -- | -- | -- |
| 221 | 0.692 | 6.49 | -1.52 | -- | 1.32 | -- | -- | -0.596 | -- | 10.05 | 11412 | -- | -- |
| 233.98 | 0.712 | 6.38 | -- | 0.579 | 0.418 | -- | -- | -0.157 | 7.08 | 27.61 | 7141 | -- | -- |
| 249.54 | 0.738 | 6.39 | -0.683 | -- | -- | -- | -- | -0.157 | -- | -- | -- | -- | -- |
| 242.83 | 0.729 | 6.36 | -- | 0.601 | -- | -- | -- | -0.091 | 7.03 | -- | -- | -- | -- |
| 251.47 | 0.739 | 6.39 | -- | -- | 0.431 | -- | -- | -0.155 | -- | 27.9 | 7142 | -- | -- |
| 261.83 | 0.755 | 6.38 | -- | -- | -- | -- | -- | -0.0814 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 188.85 | temperature | 20 | 10 | > th | dose dependent | sin | 7 | NA |
| 3 | 189.56 | temperature | 30 | 10 | < th | dose dependent | sin | 6 | NA |
| 4 | 189.57 | temperature | 10 | 270 | > th | dose dependent | rect. | 3 | 20 |
| 7 | 190.02 | temperature | 10 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 26 | 191.57 | temperature | 20 | 270 | > th | dose dependent | rect. | 3 | 6 |
| 47 | 192.96 | radiation | 1 | 4320 | > th | dose dependent | rect. | 18 | 11 |
| 53 | 193.15 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 11 |
| 55 | 193.15 | temperature | 20 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 71 | 193.70 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 81 | 193.70 | radiation | 1 | 4320 | > th | dose dependent | rect. | 18 | 1 |
| 92 | 193.85 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 15 | 1 |
| 94 | 193.96 | temperature | 20 | 270 | > th | dose independent | rect. | 3 | 19 |
| 123 | 194.43 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 131 | 194.59 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 14 | 5 |
| 144 | 194.72 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 148 | 194.73 | temperature | 20 | 720 | > th | dose dependent | rect. | 19 | 14 |
| 154 | 194.82 | humidity | 90 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 157 | 194.86 | temperature | 10 | 4320 | > th | dose dependent | rect. | 7 | 2 |
| 159 | 194.87 | temperature | 20 | 10 | > th | dose dependent | rect. | 20 | 16 |
| 161 | 194.88 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 11 |
| 169 | 194.94 | temperature | 30 | 4320 | < th | dose dependent | rect. | 7 | 2 |
| 170 | 194.95 | temperature | 20 | 270 | > th | dose independent | rect. | 3 | 7 |
| 195 | 195.15 | temperature | 15 | 43200 | > th | dose dependent | rect. | 6 | 1 |
| 196 | 195.15 | atmosphere | 1005 | 43200 | > th | dose dependent | rect. | 9 | 1 |
| 198 | 195.17 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 13 | 6 |
| 203 | 195.19 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 15 | 4 |
| 216 | 195.26 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 15 | 1 |
| 219 | 195.27 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 221 | 195.29 | atmosphere | 1010 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 229 | 195.32 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 13 | 3 |
| 233 | 195.33 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 3 |
| 248 | 195.36 | humidity | 80 | 43200 | > th | dose independent | rect. | 2 | 1 |
| 307 | 195.45 | temperature | 20 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 321 | 195.47 | atmosphere | 1010 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 364 | 195.52 | temperature | 15 | 43200 | > th | dose dependent | sin | 4 | NA |
| 366 | 195.52 | atmosphere | 1005 | 43200 | > th | dose dependent | rect. | 2 | 1 |
| 396 | 195.55 | temperature | 15 | 43200 | > th | dose dependent | rect. | 14 | 1 |
| 448 | 195.59 | temperature | 20 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 451 | 195.59 | atmosphere | 1005 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 454 | 195.59 | atmosphere | 1005 | 43200 | > th | dose dependent | rect. | 2 | 10 |
| 587 | 195.65 | temperature | 15 | 43200 | > th | dose dependent | rect. | 3 | 22 |
| 593 | 195.65 | temperature | 15 | 43200 | > th | dose dependent | rect. | 12 | 23 |
| 598 | 195.66 | temperature | 20 | 43200 | < th | dose independent | rect. | 3 | 7 |
| 599 | 195.66 | temperature | 15 | 43200 | > th | dose dependent | no | NA | NA |
| 601 | 195.66 | temperature | 15 | 43200 | > th | dose dependent | rect. | 12 | 1 |
| 620 | 195.66 | temperature | 15 | 43200 | > th | dose dependent | rect. | 14 | 20 |
| 645 | 195.67 | temperature | 20 | 43200 | < th | dose independent | rect. | 4 | 5 |
| 647 | 195.67 | temperature | 20 | 43200 | > th | dose independent | rect. | 3 | 7 |
| 675 | 195.67 | temperature | 15 | 43200 | > th | dose dependent | rect. | 8 | 23 |
| 683 | 195.68 | atmosphere | 1005 | 43200 | > th | dose dependent | sin | 5 | NA |
| 711 | 195.69 | wind | 3 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 715 | 195.69 | temperature | 20 | 43200 | < th | dose independent | rect. | 2 | 9 |
| 931 | 195.77 | temperature | 15 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 936 | 195.77 | temperature | 10 | 270 | > th | dose dependent | rect. | 19 | 14 |
| 972 | 195.78 | temperature | 15 | 43200 | > th | dose dependent | rect. | 12 | 15 |