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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0571800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.96 (0.0208) R2 : 0.00052
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0213 (0.0438) R2dN8 : 0.000672 R2N8 : 0.00052
σ : 0.391
deviance : 70.33
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
61.16 0.367 3 -0.0286 0.0552 2.81 -0.278 5.87 -0.0143 12.9 17.35 762 -- --
67.21 0.382 2.95 0.0746 0.0802 0.481 0.104 -- 0.0333 11.9 21.57 1096 -- --
61.15 0.364 3 -0.0292 0.0754 3 -- 6.21 -0.0123 11.8 16.98 716 -- --
67.23 0.382 2.95 0.0718 0.0887 0.485 -- -- 0.0336 11.2 21.5 1103 -- --
61.42 0.365 3.01 -0.0237 -- 3.26 -- 6.66 -0.0155 -- 16.96 730 -- --
69.35 0.39 2.96 -0.0559 0.118 -- 0.0699 -- -0.0266 11.5 -- -- -- --
69.37 0.39 2.96 -0.053 0.118 -- -- -- -0.0262 11.6 -- -- -- --
67.67 0.383 2.95 0.0774 -- 0.516 -- -- 0.0356 -- 21.5 1036 -- --
67.35 0.382 2.95 -- 0.0888 0.441 -- -- 0.022 11.3 21.5 1099 -- --
70.25 0.392 2.97 -0.0563 -- -- -- -- -0.0276 -- -- -- -- --
69.44 0.39 2.96 -- 0.119 -- -- -- -0.0203 11.6 -- -- -- --
67.8 0.384 2.95 -- -- 0.468 -- -- 0.0228 -- 21.5 1032 -- --
70.33 0.391 2.96 -- -- -- -- -- -0.0213 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 59.63 wind 9 10 > th dose independent rect. 18 1
4 59.63 wind 9 10 > th dose dependent rect. 18 1
7 59.79 wind 9 90 > th dose dependent rect. 17 17
8 59.80 wind 9 90 > th dose dependent rect. 17 9
39 60.10 wind 9 90 > th dose independent rect. 17 17
73 60.55 temperature 20 1440 < th dose dependent rect. 19 2
74 60.63 temperature 20 1440 < th dose dependent rect. 17 4
76 60.64 temperature 20 1440 < th dose dependent rect. 12 9
80 60.66 temperature 20 1440 < th dose dependent rect. 12 2
90 60.74 temperature 20 1440 < th dose independent rect. 12 1
108 60.84 temperature 20 1440 > th dose independent rect. 15 3
118 60.86 temperature 20 1440 < th dose independent rect. 12 6
121 60.90 wind 9 4320 > th dose independent rect. 3 1
155 60.90 wind 9 4320 > th dose dependent rect. 3 1
188 60.92 temperature 20 1440 < th dose independent rect. 16 2
202 60.99 wind 9 90 > th dose independent sin 13 NA
203 60.99 wind 9 90 < th dose independent sin 13 NA
221 61.10 temperature 20 1440 > th dose independent rect. 12 1
234 61.22 wind 9 90 > th dose dependent sin 13 NA
252 61.35 wind 1 720 < th dose dependent rect. 7 1
304 61.69 temperature 20 1440 < th dose dependent sin 20 NA
310 61.74 humidity 90 1440 > th dose independent rect. 12 1
312 61.75 wind 9 90 > th dose independent rect. 12 7
350 61.79 humidity 90 1440 > th dose dependent rect. 12 1
355 61.84 humidity 90 1440 < th dose independent rect. 12 1
363 61.94 wind 1 720 < th dose independent rect. 7 1
369 62.07 wind 1 720 < th dose independent rect. 6 4
378 62.20 wind 9 90 > th dose dependent rect. 14 12
447 62.29 temperature 20 720 < th dose dependent rect. 7 1
475 62.74 temperature 20 720 < th dose dependent rect. 7 5
511 63.00 wind 1 720 > th dose independent rect. 6 7
564 63.07 wind 3 10 < th dose dependent rect. 12 1
630 63.37 humidity 70 90 < th dose independent rect. 16 1
642 63.43 wind 1 270 < th dose dependent rect. 7 14
650 63.49 wind 1 1440 < th dose independent rect. 20 1
652 63.49 temperature 20 1440 < th dose independent rect. 7 14
672 63.59 wind 9 43200 > th dose independent rect. 3 1
674 63.60 wind 9 43200 < th dose independent rect. 4 2
677 63.61 wind 9 43200 > th dose dependent rect. 2 2
681 63.63 wind 9 43200 < th dose independent rect. 2 4
701 63.70 temperature 20 720 < th dose dependent rect. 24 22
707 63.72 temperature 20 720 < th dose independent rect. 7 1
709 63.72 wind 9 43200 < th dose independent rect. 24 6
717 63.73 wind 9 43200 > th dose independent rect. 24 6
756 63.85 temperature 20 720 < th dose dependent rect. 24 8
761 63.86 temperature 20 1440 > th dose independent rect. 7 15
764 63.87 wind 9 43200 > th dose independent rect. 2 4
781 63.88 temperature 20 720 < th dose dependent rect. 20 13
837 63.92 temperature 20 720 < th dose dependent no NA NA
895 63.94 wind 1 1440 > th dose independent rect. 20 1
913 63.96 temperature 20 720 < th dose independent rect. 7 5
922 63.97 temperature 20 720 < th dose dependent sin 7 NA
958 64.00 wind 9 43200 > th dose dependent rect. 24 6
969 64.02 wind 9 4320 > th dose dependent rect. 23 8
973 64.03 wind 9 10 > th dose independent sin 12 NA