Os12g0570400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os12g0570400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 162.48 | 0.599 | 8.11 | -0.681 | 2.81 | 2.22 | -0.619 | -0.941 | -0.0916 | 22.7 | 10.38 | 66 | 21.1 | -- |
| 163.68 | 0.596 | 8.1 | -0.659 | 2.82 | 2.22 | -0.72 | -- | -0.09 | 22.7 | 10.17 | 65 | 21 | -- |
| 163.82 | 0.596 | 8.11 | -0.697 | 2.81 | 2.22 | -- | -1.13 | -0.0804 | 22.8 | 9.419 | 65 | 20.9 | -- |
| 165.29 | 0.599 | 8.11 | -0.635 | 2.78 | 2.2 | -- | -- | -0.0948 | 22.9 | 8.253 | 65 | 20.7 | -- |
| 236.35 | 0.716 | 8.03 | -0.66 | -- | 2.83 | -- | -0.513 | -0.131 | -- | 22.13 | 23 | 5.4 | -- |
| 236.02 | 0.72 | 8.1 | -0.58 | 3.05 | -- | -0.552 | -- | -0.174 | 0.151 | -- | -- | -- | -- |
| 237.34 | 0.721 | 8.1 | -0.558 | 3.05 | -- | -- | -- | -0.171 | 0.155 | -- | -- | -- | -- |
| 232.4 | 0.71 | 8.05 | -0.551 | -- | 2.96 | -- | -- | -0.156 | -- | 48.14 | 6 | 5.7 | -- |
| 174.86 | 0.616 | 8.08 | -- | 2.79 | 2.14 | -- | -- | -0.0135 | 23 | 6.731 | 75 | 20.5 | -- |
| 822.67 | 1.34 | 8.04 | -0.46 | -- | -- | -- | -- | -0.126 | -- | -- | -- | -- | -- |
| 245.54 | 0.733 | 8.09 | -- | 3.04 | -- | -- | -- | -0.109 | 0.145 | -- | -- | -- | -- |
| 240.39 | 0.722 | 8.03 | -- | -- | 2.95 | -- | -- | -0.0942 | -- | 47.69 | 6 | 5.71 | -- |
| 828.24 | 1.34 | 8.03 | -- | -- | -- | -- | -- | -0.0752 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 164.93 | radiation | 10.0 | 90 | < th | dose dependent | sin | 3 | NA |
| 12 | 172.64 | radiation | 10.0 | 90 | < th | dose dependent | rect. | 2 | 15 |
| 23 | 174.00 | radiation | 20.0 | 90 | < th | dose dependent | rect. | 1 | 12 |
| 70 | 178.65 | radiation | 10.0 | 90 | < th | dose independent | rect. | 1 | 16 |
| 91 | 179.54 | radiation | 1.0 | 90 | < th | dose independent | sin | 2 | NA |
| 94 | 179.58 | radiation | 1.0 | 90 | > th | dose independent | sin | 2 | NA |
| 100 | 179.79 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 1 | 18 |
| 108 | 180.58 | atmosphere | 1000.0 | 90 | > th | dose independent | rect. | 15 | 15 |
| 139 | 181.66 | radiation | 10.0 | 90 | < th | dose independent | rect. | 1 | 12 |
| 162 | 182.10 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 2 | 17 |
| 188 | 182.68 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 22 | 21 |
| 240 | 183.74 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 23 |
| 242 | 183.74 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 23 |
| 261 | 184.24 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 24 | 17 |
| 268 | 184.40 | radiation | 20.0 | 90 | < th | dose dependent | rect. | 7 | 23 |
| 295 | 184.85 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 12 | 18 |
| 298 | 184.87 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 4 | 21 |
| 301 | 184.87 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 4 | 21 |
| 313 | 185.00 | humidity | 70.0 | 10 | > th | dose dependent | sin | 5 | NA |
| 314 | 185.02 | atmosphere | 1000.0 | 90 | > th | dose independent | rect. | 2 | 17 |
| 397 | 185.99 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 13 | 17 |
| 416 | 186.20 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 1 | 3 |
| 439 | 186.44 | humidity | 60.0 | 270 | > th | dose independent | rect. | 24 | 17 |
| 455 | 186.61 | atmosphere | 1000.0 | 90 | > th | dose independent | rect. | 1 | 5 |
| 456 | 186.65 | radiation | 1.0 | 90 | > th | dose dependent | sin | 8 | NA |
| 500 | 186.99 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 23 | 20 |
| 535 | 187.41 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 15 | 15 |
| 552 | 187.59 | atmosphere | 1000.0 | 30 | > th | dose independent | rect. | 3 | 3 |
| 554 | 187.59 | radiation | 20.0 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 564 | 187.65 | wind | 9.0 | 270 | < th | dose independent | rect. | 4 | 21 |
| 569 | 187.71 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 1 | 3 |
| 591 | 187.90 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 3 | 3 |
| 594 | 187.92 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 6 | 20 |
| 596 | 187.92 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 6 | 20 |
| 597 | 187.92 | radiation | 20.0 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 602 | 187.94 | radiation | 20.0 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 607 | 187.97 | radiation | 20.0 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 618 | 188.07 | radiation | 20.0 | 30 | < th | dose dependent | no | NA | NA |
| 656 | 188.42 | temperature | 30.0 | 270 | < th | dose independent | rect. | 24 | 17 |
| 661 | 188.47 | radiation | 1.0 | 90 | > th | dose independent | rect. | 6 | 9 |
| 662 | 188.47 | radiation | 10.0 | 10 | < th | dose independent | rect. | 7 | 23 |
| 671 | 188.55 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 3 | 16 |
| 683 | 188.65 | humidity | 80.0 | 90 | > th | dose dependent | rect. | 1 | 22 |
| 693 | 188.73 | wind | 9.0 | 10 | < th | dose independent | rect. | 6 | 21 |
| 779 | 189.28 | temperature | 10.0 | 270 | > th | dose independent | rect. | 1 | 3 |
| 781 | 189.28 | temperature | 30.0 | 270 | < th | dose independent | rect. | 1 | 3 |
| 782 | 189.28 | humidity | 50.0 | 270 | > th | dose independent | rect. | 1 | 3 |
| 786 | 189.28 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 1 | 3 |
| 788 | 189.28 | radiation | 1.0 | 270 | < th | dose independent | rect. | 1 | 3 |
| 793 | 189.28 | temperature | 10.0 | 270 | > th | dose independent | rect. | 4 | 21 |
| 794 | 189.28 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 1 | 3 |
| 810 | 189.32 | wind | 9.0 | 270 | < th | dose independent | rect. | 1 | 3 |
| 816 | 189.36 | wind | 9.0 | 30 | < th | dose independent | rect. | 3 | 3 |
| 817 | 189.36 | temperature | 10.0 | 30 | > th | dose independent | rect. | 3 | 3 |
| 819 | 189.36 | temperature | 30.0 | 30 | < th | dose independent | rect. | 3 | 3 |
| 820 | 189.36 | humidity | 50.0 | 30 | > th | dose independent | rect. | 3 | 3 |
| 824 | 189.36 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 3 | 3 |
| 826 | 189.36 | radiation | 20.0 | 30 | < th | dose independent | rect. | 3 | 3 |
| 830 | 189.36 | temperature | 10.0 | 30 | > th | dose independent | rect. | 6 | 21 |
| 839 | 189.43 | humidity | 70.0 | 10 | > th | dose dependent | rect. | 2 | 10 |
| 849 | 189.50 | radiation | 40.0 | 30 | < th | dose dependent | rect. | 3 | 3 |
| 867 | 189.59 | humidity | 70.0 | 90 | > th | dose dependent | rect. | 1 | 12 |
| 881 | 189.65 | radiation | 10.0 | 90 | < th | dose independent | rect. | 7 | 23 |
| 887 | 189.68 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 1 | 5 |
| 890 | 189.68 | radiation | 30.0 | 90 | < th | dose dependent | rect. | 9 | 21 |
| 916 | 189.79 | radiation | 20.0 | 30 | < th | dose independent | rect. | 14 | 16 |
| 920 | 189.81 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 6 | 21 |
| 971 | 190.01 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 10 | 20 |