Os12g0569000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os12g0569000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 57.82 | 0.357 | 9.59 | -0.0359 | 1.25 | 1.48 | 0.672 | -2.13 | -0.269 | 21.2 | 23.1 | 1258 | -- | -- |
| 60.29 | 0.362 | 9.52 | 0.581 | 1.23 | 1.32 | 0.557 | -- | -0.112 | 21.1 | 22.9 | 1200 | -- | -- |
| 59.39 | 0.359 | 9.59 | -0.0523 | 1.26 | 1.48 | -- | -2.1 | -0.263 | 21.1 | 23.24 | 1263 | -- | -- |
| 61.25 | 0.365 | 9.52 | 0.544 | 1.21 | 1.34 | -- | -- | -0.106 | 21.1 | 22.89 | 1184 | -- | -- |
| 136.35 | 0.544 | 9.54 | -0.0507 | -- | 1.85 | -- | -2.1 | -0.221 | -- | 24.2 | 2161 | -- | -- |
| 116.62 | 0.506 | 9.46 | 0.999 | 1.36 | -- | 0.69 | -- | 0.153 | 21.7 | -- | -- | -- | -- |
| 118.42 | 0.51 | 9.46 | 0.973 | 1.35 | -- | -- | -- | 0.152 | 21.7 | -- | -- | -- | -- |
| 104.58 | 0.476 | 9.5 | 0.439 | -- | 2.07 | -- | -- | -0.174 | -- | 22.8 | 807 | -- | -- |
| 68.48 | 0.385 | 9.53 | -- | 1.21 | 1.47 | -- | -- | -0.174 | 21.1 | 22.84 | 1192 | -- | -- |
| 227.12 | 0.704 | 9.43 | 0.985 | -- | -- | -- | -- | 0.15 | -- | -- | -- | -- | -- |
| 143.36 | 0.56 | 9.49 | -- | 1.36 | -- | -- | -- | 0.0436 | 21.7 | -- | -- | -- | -- |
| 109.1 | 0.486 | 9.53 | -- | -- | 2.23 | -- | -- | -0.297 | -- | 20.85 | 793 | -- | -- |
| 252.71 | 0.742 | 9.45 | -- | -- | -- | -- | -- | 0.0406 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 58.97 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 8 |
| 3 | 59.09 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 3 |
| 33 | 59.66 | temperature | 25 | 1440 | > th | dose dependent | sin | 19 | NA |
| 238 | 60.87 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 453 | 62.92 | temperature | 10 | 1440 | > th | dose dependent | rect. | 16 | 3 |
| 975 | 65.39 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 2 |