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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0568500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Plant metallothionein, family 15 protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.28 (0.0634) R2 : 0.552
β1 : -5.51 (0.249) R2dD : 0.699 R2D : 0.36
β2 : 0.729 (0.149) R2dC : 0.0234 R2C : 0.0147
β3 : 0.082 (0.273) R2dE : 0.000162 R2E : -0.00368
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -9.11 (1.15) R2dD*E : 0.0949 R2D*E : -0.195
γ1 : -1.24 (0.164) R2dN8 : 0.134 R2N8 : -0.0362
σ : 1.08
deviance : 535.4
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_____
C
peak time of C : 7.15
E
wheather : humidity
threshold : 89
memory length : 4076
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 22.8
open length of G : 5.5

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
534.04 1.09 4.28 -5.51 0.732 0.0865 -0.823 -9.06 -1.24 7.08 89 4097 22.9 5.32
605.18 1.15 4.36 -4.56 0.349 0.403 -0.658 -- -0.943 7.8 130.2 4887 23.6 6.03
535.4 1.08 4.28 -5.51 0.729 0.082 -- -9.11 -1.24 7.15 89 4076 22.8 5.5
605.96 1.15 4.39 -4.53 0.791 -0.306 -- -- -1.03 6.36 118.5 7162 23.6 5.27
560.07 1.1 4.32 -5.45 -- 0.343 -- -9.7 -1.3 -- 89.47 3793 22.8 5.42
605.87 1.15 4.38 -4.5 0.74 -- -1.14 -- -0.986 7.66 -- -- -- --
609.57 1.16 4.38 -4.53 0.739 -- -- -- -0.985 7.7 -- -- -- --
603.27 1.14 4.42 -4.66 -- 0.691 -- -- -0.993 -- 95 575 3.28e-06 5.33
972.04 1.45 4.18 -- 0.488 0.604 -- -- -0.378 7.45 57.01 31506 0.933 6.54
639.03 1.18 4.4 -4.52 -- -- -- -- -0.974 -- -- -- -- --
1149.69 1.59 4.27 -- 0.709 -- -- -- -0.481 8.14 -- -- -- --
777.59 1.3 4.21 -- -- 2.26 -- -- -0.339 -- 58 31529 1 6.5
1177.29 1.6 4.28 -- -- -- -- -- -0.473 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 539.87 humidity 90 4320 < th dose independent rect. 23 5
7 541.85 humidity 80 4320 > th dose dependent rect. 23 4
17 542.63 humidity 90 4320 > th dose independent rect. 23 5
58 546.29 humidity 50 4320 > th dose dependent rect. 23 4
97 548.21 humidity 90 4320 > th dose independent rect. 1 1
163 550.27 humidity 90 4320 < th dose independent sin 9 NA
262 553.33 humidity 90 4320 > th dose dependent rect. 23 16
297 554.05 humidity 90 4320 > th dose independent sin 9 NA
362 555.61 humidity 90 4320 > th dose dependent sin 7 NA
365 555.65 humidity 90 4320 < th dose dependent rect. 23 4
394 556.14 atmosphere 1005 90 > th dose independent rect. 2 7
430 556.64 radiation 10 4320 > th dose independent rect. 10 22
448 557.03 radiation 10 4320 > th dose independent sin 20 NA
471 557.35 humidity 90 4320 > th dose dependent rect. 5 1
480 557.57 radiation 10 4320 > th dose independent rect. 7 11
530 557.90 radiation 10 4320 > th dose independent rect. 15 23
534 557.95 radiation 10 4320 > th dose independent no NA NA
646 558.32 radiation 10 4320 > th dose independent rect. 10 8
660 558.34 atmosphere 1005 90 > th dose dependent rect. 2 7
734 558.95 atmosphere 1005 10 > th dose independent rect. 2 8
830 559.71 humidity 90 4320 > th dose dependent rect. 13 18
894 560.22 radiation 1 4320 < th dose independent rect. 24 6
896 560.23 wind 9 43200 < th dose dependent rect. 23 1
911 560.39 radiation 1 4320 < th dose independent rect. 20 10
915 560.42 radiation 1 4320 > th dose independent rect. 4 2
953 560.61 radiation 1 4320 < th dose independent rect. 4 2
988 560.98 humidity 90 720 < th dose independent rect. 21 2