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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0568200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Metallothionein-like protein 2A (MT-2A) (MT-K) (MT-1G).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.95 (0.0395) R2 : 0.0916
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 4.66 (0.722) R2dE : 0.0831 R2E : 0.083
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.152 (0.0832) R2dN8 : 0.00861 R2N8 : 0.00855
σ : 0.742
deviance : 253.76
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 20.02
memory length : 13
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 6.01
open length of G : 3.73

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
248.65 0.741 2.97 -0.26 0.209 8.82 0.0223 -17.8 -0.172 22.2 20 11 6 3.82
251.28 0.744 2.97 -0.245 0.198 4.79 0.0305 -- -0.188 22.8 20 11 6 3.82
248.58 0.734 2.98 -0.253 0.202 8.82 -- -18 -0.169 22.1 19.99 12 6.01 3.8
249.74 0.736 2.96 -0.229 0.211 4.76 -- -- -0.177 22.3 20.02 12 6.01 3.8
250.92 0.738 2.97 -0.237 -- 8.88 -- -17.9 -0.174 -- 20.02 10 6 3.83
273.94 0.776 2.97 -0.213 0.171 -- -0.0975 -- -0.199 23.7 -- -- -- --
273.97 0.775 2.97 -0.209 0.172 -- -- -- -0.198 23.5 -- -- -- --
252.42 0.74 2.96 -0.224 -- 4.67 -- -- -0.175 -- 20.01 13 6.01 3.78
251.11 0.738 2.96 -- 0.209 4.76 -- -- -0.152 22.3 20.02 13 6.01 3.75
275.83 0.776 2.96 -0.204 -- -- -- -- -0.196 -- -- -- -- --
275.12 0.776 2.96 -- 0.17 -- -- -- -0.175 23.4 -- -- -- --
253.76 0.742 2.95 -- -- 4.66 -- -- -0.152 -- 20.02 13 6.01 3.73
276.93 0.777 2.96 -- -- -- -- -- -0.174 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 248.79 temperature 20 10 < th dose independent rect. 6 3
3 249.59 temperature 20 30 < th dose dependent rect. 6 3
13 250.54 temperature 20 90 < th dose dependent rect. 7 12
16 250.73 temperature 20 10 < th dose independent rect. 7 10
30 251.03 temperature 20 10 < th dose independent rect. 7 5
35 251.04 temperature 20 90 < th dose independent rect. 7 5
47 251.17 wind 5 10 > th dose independent rect. 8 1
49 251.17 wind 5 10 > th dose dependent rect. 8 1
80 251.33 humidity 90 270 < th dose dependent rect. 4 1
162 254.41 humidity 80 90 < th dose dependent rect. 6 1
163 254.48 temperature 25 30 > th dose dependent rect. 21 1
165 255.71 humidity 80 90 < th dose independent rect. 6 1
173 257.16 humidity 80 270 < th dose independent rect. 4 2
177 257.80 wind 1 10 < th dose independent rect. 12 11
178 257.90 wind 3 90 > th dose dependent rect. 6 1
187 258.38 wind 1 10 < th dose dependent rect. 12 6
192 258.41 wind 1 10 < th dose dependent rect. 12 4
196 258.44 wind 1 10 < th dose dependent rect. 12 2
199 258.46 wind 1 10 < th dose dependent rect. 7 8
221 258.59 wind 1 10 < th dose independent rect. 12 6
230 258.65 wind 1 10 < th dose independent rect. 12 4
235 258.77 atmosphere 1005 90 < th dose dependent rect. 11 3
240 259.01 wind 3 90 < th dose independent rect. 20 1
268 259.38 wind 1 90 < th dose independent rect. 12 1
269 259.38 wind 1 10 < th dose independent rect. 14 4
283 259.41 wind 1 10 < th dose dependent rect. 14 4
322 259.63 temperature 20 30 < th dose independent rect. 21 1
370 259.89 wind 5 10 < th dose dependent rect. 21 1
373 259.91 wind 1 10 < th dose independent rect. 7 8
397 260.01 wind 3 90 > th dose independent rect. 6 1
398 260.01 temperature 20 10 < th dose dependent rect. 22 1
415 260.13 atmosphere 1005 270 < th dose dependent rect. 10 1
498 260.72 humidity 80 1440 > th dose independent rect. 4 2
560 261.08 wind 3 14400 < th dose dependent rect. 14 12
622 261.69 temperature 20 270 < th dose dependent rect. 4 1
626 261.79 radiation 10 720 > th dose dependent rect. 16 2
639 261.82 radiation 1 270 > th dose independent rect. 4 1
649 261.82 radiation 1 270 > th dose dependent rect. 4 1
659 261.84 radiation 20 720 < th dose dependent rect. 17 8
662 261.86 wind 7 90 < th dose dependent rect. 12 10
664 261.87 wind 1 14400 > th dose independent rect. 14 12
678 262.04 radiation 10 720 < th dose independent rect. 22 8
682 262.07 wind 5 90 < th dose independent rect. 12 10
686 262.10 wind 3 14400 < th dose independent rect. 14 5
702 262.26 wind 3 14400 > th dose independent rect. 14 5
707 262.29 wind 1 14400 < th dose independent rect. 14 12
708 262.29 wind 3 14400 < th dose dependent sin 17 NA
714 262.33 radiation 30 4320 > th dose independent rect. 16 16
723 262.45 wind 3 14400 < th dose dependent rect. 14 6
725 262.47 temperature 25 30 > th dose independent rect. 21 1
727 262.47 wind 1 720 < th dose dependent rect. 13 1
755 262.65 wind 1 30 < th dose dependent sin 23 NA
762 262.70 atmosphere 1015 90 < th dose dependent rect. 11 11
767 262.74 wind 1 720 < th dose independent rect. 13 1
780 262.81 atmosphere 1005 90 < th dose dependent rect. 7 7
783 262.83 atmosphere 1005 10 < th dose dependent rect. 7 8
803 262.91 wind 3 14400 < th dose dependent rect. 14 1
812 262.95 wind 1 30 < th dose independent sin 22 NA
820 262.98 radiation 30 1440 > th dose independent rect. 16 1
847 263.01 wind 5 10 > th dose independent rect. 3 6
850 263.01 humidity 60 270 < th dose dependent rect. 18 1
854 263.03 humidity 60 270 < th dose independent rect. 18 1
861 263.05 radiation 10 720 < th dose independent rect. 16 9
862 263.05 radiation 10 720 < th dose dependent rect. 22 8
867 263.09 wind 5 90 < th dose dependent rect. 16 6
896 263.16 temperature 30 720 < th dose independent rect. 14 1
915 263.22 wind 3 14400 > th dose independent rect. 18 1
923 263.24 temperature 25 720 > th dose dependent rect. 16 2
926 263.25 wind 1 14400 > th dose independent sin 17 NA
927 263.25 atmosphere 995 4320 > th dose independent rect. 3 1
931 263.27 temperature 30 720 < th dose independent rect. 14 10
962 263.36 wind 5 90 < th dose independent rect. 1 21
969 263.38 wind 3 90 < th dose independent rect. 16 6