FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0567500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein kinase-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.54 (0.0441) R2 : 0.11
β1 : -0.433 (0.162) R2dD : 0.015 R2D : 0.00451
β2 : -- (--) R2dC : -- R2C : --
β3 : 4.22 (0.606) R2dE : 0.235 R2E : -0.123
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -10.7 (1.63) R2dD*E : 0.207 R2D*E : -0.12
γ1 : 0.0149 (0.0937) R2dN8 : 0.000102 R2N8 : -0.00241
σ : 0.818
deviance : 308.78
__
_____
C
peak time of C : --
E
wheather : wind
threshold : 1.113
memory length : 18
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 14.2
open length of G : 11.6

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
304.96 0.82 3.53 -0.414 0.308 3.25 0.426 -9.23 0.0141 2.39 1.159 29 14 11.3
335.62 0.86 3.51 -0.34 0.363 0.187 0.116 -- -0.0318 1.69 1.159 29 14 11.3
304.23 0.812 3.55 -0.414 0.335 3.82 -- -10.4 0.0172 2.19 1.116 19 14 11.6
328.46 0.844 3.5 -0.386 0.279 0.746 -- -- -0.00964 2.88 1.6 33 14 11.3
308.78 0.818 3.54 -0.433 -- 4.22 -- -10.7 0.0149 -- 1.113 18 14.2 11.6
335.8 0.859 3.51 -0.332 0.37 -- 0.135 -- -0.0343 1.62 -- -- -- --
335.88 0.858 3.51 -0.336 0.37 -- -- -- -0.035 1.57 -- -- -- --
331.53 0.848 3.49 -0.427 -- 0.797 -- -- 0.0199 -- 1.722 25 14.3 11.6
332.65 0.849 3.5 -- 0.268 0.653 -- -- 0.0195 2.81 1.7 26 14.4 11.5
344.24 0.867 3.51 -0.321 -- -- -- -- -0.0269 -- -- -- -- --
338.85 0.861 3.5 -- 0.364 -- -- -- 0.00248 1.54 -- -- -- --
336.44 0.854 3.5 -- -- 0.725 -- -- 0.0453 -- 1.788 26 14.2 11.7
346.96 0.869 3.5 -- -- -- -- -- 0.00877 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 313.58 wind 1 30 < th dose independent rect. 15 9
5 315.05 wind 1 30 < th dose independent rect. 10 14
7 315.78 wind 1 30 < th dose independent rect. 22 2
29 319.00 atmosphere 1005 720 > th dose independent rect. 15 11
32 319.31 wind 3 30 < th dose dependent rect. 14 10
34 319.53 atmosphere 1005 720 > th dose independent rect. 15 8
37 319.72 wind 3 10 > th dose independent rect. 11 2
45 320.25 temperature 25 90 > th dose dependent rect. 2 1
50 320.37 temperature 25 90 > th dose independent rect. 2 1
56 320.64 atmosphere 1005 30 > th dose independent rect. 16 14
57 320.65 atmosphere 1000 30 > th dose dependent rect. 16 14
64 320.85 wind 3 90 > th dose independent rect. 11 1
80 321.30 atmosphere 1005 1440 < th dose independent rect. 17 3
82 321.31 atmosphere 1005 720 < th dose independent rect. 16 9
89 321.43 atmosphere 1005 720 > th dose independent sin 17 NA
101 321.57 wind 1 10 > th dose dependent rect. 11 2
104 321.61 wind 3 30 < th dose dependent rect. 10 14
128 321.92 atmosphere 1005 90 < th dose dependent rect. 2 1
135 322.00 atmosphere 1005 10 < th dose independent rect. 22 7
139 322.04 wind 3 720 > th dose independent rect. 3 3
142 322.07 wind 3 720 > th dose dependent rect. 3 3
150 322.12 wind 1 90 < th dose independent rect. 14 1
170 322.30 wind 7 90 > th dose dependent rect. 18 17
173 322.36 atmosphere 1005 720 > th dose independent rect. 9 17
175 322.36 wind 7 90 > th dose dependent rect. 20 15
190 322.48 atmosphere 1000 10 < th dose independent rect. 3 1
198 322.48 atmosphere 1000 10 < th dose dependent rect. 3 1
211 322.52 wind 9 90 > th dose independent rect. 18 17
225 322.59 atmosphere 1005 1440 < th dose independent rect. 19 1
245 322.66 atmosphere 1005 1440 > th dose independent rect. 19 1
250 322.68 wind 5 10 > th dose dependent rect. 1 12
277 322.80 wind 5 10 > th dose dependent rect. 7 6
301 322.86 wind 3 30 < th dose dependent rect. 19 5
302 322.88 atmosphere 1005 720 < th dose independent sin 16 NA
303 322.88 wind 9 90 > th dose independent rect. 10 1
311 322.91 atmosphere 1005 30 < th dose independent rect. 15 14
353 323.05 wind 3 30 < th dose dependent rect. 8 16
359 323.11 wind 9 720 > th dose independent rect. 10 1
360 323.12 wind 5 90 < th dose dependent rect. 14 1
361 323.13 wind 5 10 > th dose independent rect. 5 8
368 323.15 wind 1 30 < th dose independent rect. 6 18
369 323.17 wind 5 10 > th dose independent rect. 7 6
372 323.18 wind 5 10 < th dose independent rect. 14 2
378 323.19 atmosphere 1015 720 < th dose dependent rect. 21 3
384 323.22 temperature 20 30 > th dose independent rect. 22 13
387 323.26 wind 7 30 > th dose dependent sin 9 NA
392 323.28 wind 7 90 > th dose dependent rect. 1 10
409 323.34 temperature 20 1440 < th dose independent rect. 23 1
417 323.38 wind 7 90 > th dose dependent rect. 7 4
430 323.42 humidity 80 90 > th dose independent rect. 12 3
475 323.57 atmosphere 1005 90 > th dose independent rect. 19 11
489 323.64 radiation 10 720 < th dose independent rect. 17 7
495 323.65 wind 9 720 > th dose independent rect. 17 19
503 323.67 atmosphere 1015 720 < th dose dependent rect. 19 5
518 323.69 atmosphere 1015 10 < th dose dependent rect. 22 13
522 323.72 wind 7 30 < th dose independent rect. 15 23
530 323.73 wind 1 90 > th dose dependent rect. 2 10
537 323.75 wind 9 720 > th dose independent rect. 18 17
553 323.78 humidity 80 90 > th dose dependent rect. 12 3
555 323.79 temperature 20 1440 > th dose independent rect. 23 2
583 323.82 atmosphere 1000 720 > th dose dependent rect. 16 11
585 323.83 wind 1 90 < th dose dependent rect. 14 1
620 323.89 wind 9 90 > th dose dependent rect. 12 23
629 323.91 atmosphere 1005 30 > th dose independent rect. 11 19
632 323.92 atmosphere 1005 30 < th dose independent rect. 19 10
634 323.92 wind 9 90 > th dose dependent rect. 14 21
638 323.94 atmosphere 1005 30 > th dose independent sin 12 NA
650 323.97 temperature 20 30 > th dose independent rect. 13 22
651 323.97 wind 7 720 > th dose dependent rect. 2 9
682 324.01 atmosphere 1005 30 > th dose dependent rect. 12 18
691 324.03 wind 9 90 > th dose independent rect. 12 23
701 324.05 wind 3 90 > th dose independent rect. 10 12
702 324.05 wind 9 90 > th dose independent rect. 14 21
703 324.05 wind 7 10 < th dose dependent rect. 14 10
705 324.06 temperature 20 90 > th dose independent rect. 18 22
706 324.06 wind 3 30 < th dose dependent sin 19 NA
719 324.09 temperature 20 1440 < th dose independent rect. 1 1
751 324.13 wind 9 10 > th dose dependent rect. 17 19
810 324.23 wind 7 30 > th dose independent sin 9 NA
817 324.24 wind 9 10 > th dose independent rect. 15 21
852 324.31 atmosphere 1005 10 > th dose dependent rect. 24 6
868 324.35 wind 7 720 > th dose dependent rect. 7 4
876 324.36 atmosphere 1010 90 < th dose dependent rect. 21 7
885 324.38 wind 1 30 < th dose dependent rect. 23 1
892 324.40 wind 9 90 < th dose independent sin 10 NA
928 324.46 wind 9 90 < th dose independent sin 0 NA
939 324.47 humidity 60 10 > th dose dependent rect. 13 3
954 324.50 wind 5 4320 > th dose independent rect. 18 8
992 324.55 wind 9 90 < th dose independent no NA NA