Os12g0567100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, uncharacterized transcript.
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Os12g0567100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, uncharacterized transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 124.68 | 0.525 | 7.28 | 0.0881 | 0.392 | -2.51 | 0.634 | 1.66 | -0.0483 | 4.4 | 29.74 | 12 | -- | -- |
| 127.22 | 0.525 | 7.25 | 0.357 | 0.389 | -2.56 | 1.14 | -- | 0.000666 | 3.85 | 28.92 | 12 | -- | -- |
| 125.53 | 0.522 | 7.29 | 0.0184 | 0.383 | -2.48 | -- | 2.04 | -0.0587 | 4.62 | 29.68 | 14 | -- | -- |
| 130.78 | 0.533 | 7.25 | 0.365 | 0.376 | -2.47 | -- | -- | 0.0112 | 4.6 | 28.77 | 12 | -- | -- |
| 131.01 | 0.533 | 7.29 | 0.104 | -- | -2.19 | -- | 1.95 | -0.0259 | -- | 28.67 | 12 | -- | -- |
| 213.61 | 0.685 | 7.13 | 0.994 | 0.561 | -- | -0.713 | -- | 0.528 | 12.7 | -- | -- | -- | -- |
| 215.75 | 0.688 | 7.13 | 0.967 | 0.562 | -- | -- | -- | 0.524 | 12.6 | -- | -- | -- | -- |
| 135.5 | 0.542 | 7.24 | 0.461 | -- | -2.17 | -- | -- | 0.0643 | -- | 27.78 | 5 | -- | -- |
| 133.92 | 0.539 | 7.27 | -- | 0.431 | -2.63 | -- | -- | -0.0617 | 4.46 | 28.84 | 18 | -- | -- |
| 235.57 | 0.717 | 7.14 | 0.947 | -- | -- | -- | -- | 0.514 | -- | -- | -- | -- | -- |
| 240.38 | 0.725 | 7.16 | -- | 0.548 | -- | -- | -- | 0.416 | 12.5 | -- | -- | -- | -- |
| 140.1 | 0.551 | 7.26 | -- | -- | -2.36 | -- | -- | -0.023 | -- | 27.8 | 4 | -- | -- |
| 259.22 | 0.752 | 7.17 | -- | -- | -- | -- | -- | 0.409 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 118.76 | temperature | 30 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 2 | 119.56 | temperature | 10 | 270 | > th | dose dependent | rect. | 1 | 23 |
| 9 | 122.91 | temperature | 30 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 18 | 123.46 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 20 |
| 25 | 124.19 | temperature | 15 | 270 | > th | dose dependent | rect. | 12 | 23 |
| 27 | 124.27 | temperature | 15 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 28 | 124.56 | temperature | 30 | 720 | < th | dose dependent | rect. | 16 | 20 |
| 34 | 124.66 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 37 | 124.85 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 43 | 125.08 | temperature | 30 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 46 | 125.33 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 59 | 125.77 | temperature | 30 | 10 | < th | dose dependent | rect. | 9 | 21 |
| 63 | 125.88 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 70 | 126.07 | temperature | 30 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 73 | 126.15 | temperature | 15 | 270 | > th | dose dependent | no | NA | NA |
| 84 | 126.56 | temperature | 15 | 10 | > th | dose dependent | no | NA | NA |
| 93 | 126.93 | temperature | 30 | 270 | < th | dose dependent | rect. | 20 | 23 |
| 98 | 126.98 | temperature | 30 | 270 | < th | dose dependent | rect. | 22 | 23 |
| 102 | 127.07 | temperature | 15 | 270 | > th | dose dependent | rect. | 10 | 23 |
| 112 | 127.32 | temperature | 20 | 1440 | > th | dose dependent | rect. | 19 | 2 |
| 113 | 127.32 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 4 |
| 119 | 127.46 | temperature | 15 | 1440 | > th | dose dependent | rect. | 17 | 16 |
| 136 | 127.69 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 16 |
| 139 | 127.80 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 193 | 128.34 | temperature | 25 | 1440 | < th | dose dependent | rect. | 4 | 1 |
| 199 | 128.39 | temperature | 30 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 203 | 128.42 | temperature | 15 | 1440 | > th | dose dependent | rect. | 3 | 6 |
| 205 | 128.43 | temperature | 30 | 1440 | < th | dose dependent | rect. | 3 | 6 |
| 242 | 128.68 | temperature | 15 | 1440 | > th | dose dependent | sin | 10 | NA |
| 279 | 128.86 | temperature | 30 | 1440 | < th | dose dependent | rect. | 4 | 3 |
| 291 | 128.93 | temperature | 15 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 304 | 128.96 | temperature | 15 | 720 | > th | dose dependent | rect. | 14 | 23 |
| 307 | 128.98 | temperature | 15 | 1440 | > th | dose dependent | rect. | 17 | 9 |
| 325 | 129.05 | temperature | 30 | 1440 | < th | dose dependent | sin | 10 | NA |
| 363 | 129.23 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 9 |
| 369 | 129.25 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 5 |
| 887 | 131.17 | temperature | 30 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 900 | 131.22 | temperature | 30 | 10 | < th | dose dependent | rect. | 23 | 23 |