Os12g0565200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Disease resistance protein family protein.
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Os12g0565200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Disease resistance protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 121.64 | 0.518 | 7.07 | 0.776 | 0.467 | 1.02 | 0.404 | -1.01 | -0.295 | 1.98 | 23.7 | 6698 | -- | -- |
| 123.87 | 0.518 | 7.09 | 0.614 | 0.446 | 1.11 | 0.61 | -- | -0.306 | 1.87 | 23.3 | 6661 | -- | -- |
| 122.23 | 0.515 | 7.08 | 0.746 | 0.464 | 1.02 | -- | -0.959 | -0.299 | 1.86 | 23.6 | 6674 | -- | -- |
| 123.28 | 0.517 | 7.12 | 0.41 | 0.466 | 1 | -- | -- | -0.404 | 1.77 | 23.5 | 6520 | -- | -- |
| 134.38 | 0.54 | 7.08 | 0.733 | -- | 0.969 | -- | -0.954 | -0.323 | -- | 23.57 | 6189 | -- | -- |
| 157.94 | 0.589 | 7.21 | -0.0954 | 0.396 | -- | 0.339 | -- | -0.792 | 2.11 | -- | -- | -- | -- |
| 158.37 | 0.589 | 7.21 | -0.105 | 0.396 | -- | -- | -- | -0.793 | 1.97 | -- | -- | -- | -- |
| 135.42 | 0.542 | 7.12 | 0.408 | -- | 0.955 | -- | -- | -0.411 | -- | 23.5 | 6161 | -- | -- |
| 126.93 | 0.525 | 7.14 | -- | 0.456 | 0.866 | -- | -- | -0.495 | 1.89 | 23.5 | 6433 | -- | -- |
| 167.8 | 0.605 | 7.2 | -0.0887 | -- | -- | -- | -- | -0.784 | -- | -- | -- | -- | -- |
| 158.66 | 0.589 | 7.21 | -- | 0.394 | -- | -- | -- | -0.782 | 1.97 | -- | -- | -- | -- |
| 138.49 | 0.548 | 7.15 | -- | -- | 0.828 | -- | -- | -0.537 | -- | 23.5 | 4691 | -- | -- |
| 168.01 | 0.605 | 7.2 | -- | -- | -- | -- | -- | -0.774 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 117.68 | wind | 3 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 2 | 118.24 | wind | 5 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 3 | 118.29 | wind | 5 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 7 | 119.66 | wind | 5 | 43200 | > th | dose dependent | rect. | 13 | 17 |
| 8 | 119.74 | wind | 5 | 43200 | > th | dose dependent | sin | 16 | NA |
| 9 | 119.75 | wind | 5 | 43200 | > th | dose dependent | rect. | 11 | 19 |
| 16 | 119.82 | wind | 5 | 43200 | > th | dose independent | rect. | 8 | 17 |
| 28 | 119.90 | temperature | 25 | 4320 | > th | dose dependent | rect. | 8 | 2 |
| 30 | 119.92 | wind | 5 | 43200 | > th | dose independent | rect. | 5 | 20 |
| 45 | 119.98 | wind | 7 | 43200 | < th | dose independent | rect. | 13 | 18 |
| 64 | 120.06 | wind | 7 | 43200 | > th | dose independent | rect. | 13 | 18 |
| 136 | 120.29 | wind | 5 | 43200 | > th | dose dependent | rect. | 14 | 9 |
| 139 | 120.31 | wind | 5 | 43200 | < th | dose independent | rect. | 8 | 20 |
| 141 | 120.31 | wind | 5 | 43200 | > th | dose independent | rect. | 13 | 23 |
| 144 | 120.32 | wind | 5 | 43200 | < th | dose independent | rect. | 7 | 18 |
| 149 | 120.33 | wind | 5 | 43200 | < th | dose independent | rect. | 5 | 20 |
| 151 | 120.33 | wind | 5 | 43200 | > th | dose independent | rect. | 23 | 23 |
| 155 | 120.35 | wind | 5 | 43200 | < th | dose independent | rect. | 8 | 22 |
| 167 | 120.38 | wind | 5 | 43200 | > th | dose independent | sin | 14 | NA |
| 175 | 120.39 | wind | 5 | 43200 | > th | dose independent | no | NA | NA |
| 213 | 120.48 | wind | 5 | 43200 | > th | dose independent | rect. | 19 | 23 |
| 251 | 120.56 | wind | 5 | 43200 | > th | dose independent | rect. | 16 | 23 |
| 257 | 120.60 | wind | 7 | 43200 | < th | dose independent | sin | 16 | NA |
| 266 | 120.61 | wind | 5 | 43200 | > th | dose dependent | rect. | 5 | 17 |
| 273 | 120.64 | wind | 5 | 43200 | < th | dose independent | rect. | 19 | 23 |
| 290 | 120.67 | wind | 5 | 43200 | < th | dose independent | rect. | 23 | 23 |
| 291 | 120.67 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 12 |
| 299 | 120.69 | wind | 5 | 43200 | < th | dose independent | no | NA | NA |
| 355 | 120.80 | wind | 5 | 43200 | < th | dose independent | rect. | 16 | 23 |
| 481 | 121.02 | wind | 5 | 43200 | > th | dose independent | rect. | 17 | 5 |
| 521 | 121.07 | wind | 5 | 43200 | > th | dose independent | rect. | 16 | 7 |
| 597 | 121.18 | wind | 5 | 43200 | > th | dose independent | sin | 0 | NA |
| 641 | 121.26 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 12 |
| 653 | 121.28 | wind | 5 | 43200 | > th | dose dependent | no | NA | NA |
| 692 | 121.39 | wind | 5 | 43200 | < th | dose independent | rect. | 17 | 5 |
| 709 | 121.43 | wind | 5 | 43200 | > th | dose dependent | rect. | 20 | 23 |
| 759 | 121.56 | wind | 5 | 43200 | > th | dose independent | rect. | 3 | 15 |
| 764 | 121.56 | wind | 5 | 43200 | > th | dose dependent | rect. | 17 | 23 |
| 771 | 121.58 | temperature | 25 | 4320 | > th | dose dependent | rect. | 24 | 10 |
| 772 | 121.58 | temperature | 25 | 4320 | > th | dose dependent | rect. | 23 | 12 |
| 837 | 121.70 | wind | 5 | 43200 | < th | dose independent | sin | 0 | NA |
| 838 | 121.70 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 12 |
| 841 | 121.71 | temperature | 25 | 4320 | < th | dose independent | rect. | 7 | 2 |
| 842 | 121.71 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 5 |
| 918 | 121.86 | wind | 5 | 43200 | > th | dose independent | rect. | 8 | 8 |
| 983 | 122.01 | wind | 9 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 985 | 122.02 | wind | 5 | 43200 | > th | dose independent | rect. | 9 | 6 |
| 989 | 122.03 | temperature | 25 | 4320 | > th | dose independent | rect. | 7 | 2 |