Os12g0565100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Disease resistance protein family protein.
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Os12g0565100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Disease resistance protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 61.83 | 0.369 | 9.52 | 1.5 | 0.642 | -1.37 | -0.283 | 0.332 | 0.233 | 21.7 | 15.46 | 709 | -- | -- |
| 61.9 | 0.366 | 9.52 | 1.46 | 0.645 | -1.4 | -0.216 | -- | 0.218 | 21.7 | 14.9 | 715 | -- | -- |
| 62.07 | 0.367 | 9.52 | 1.48 | 0.65 | -1.38 | -- | 0.157 | 0.227 | 21.4 | 15.61 | 656 | -- | -- |
| 62.08 | 0.367 | 9.52 | 1.46 | 0.645 | -1.4 | -- | -- | 0.218 | 21.6 | 14.9 | 708 | -- | -- |
| 68.66 | 0.388 | 9.51 | 1.43 | -- | -1.27 | -- | 0.573 | 0.203 | -- | 15.61 | 656 | -- | -- |
| 86.8 | 0.437 | 9.56 | 1.09 | 0.341 | -- | -0.321 | -- | -0.000887 | 22.8 | -- | -- | -- | -- |
| 87.23 | 0.437 | 9.56 | 1.1 | 0.342 | -- | -- | -- | 1.15e-05 | 22.8 | -- | -- | -- | -- |
| 68.94 | 0.388 | 9.52 | 1.35 | -- | -1.3 | -- | -- | 0.18 | -- | 14.9 | 708 | -- | -- |
| 108.67 | 0.488 | 9.56 | -- | 0.277 | -0.801 | -- | -- | -0.00504 | 19.4 | 20.4 | 18 | -- | -- |
| 94.48 | 0.454 | 9.56 | 1.11 | -- | -- | -- | -- | 0.00224 | -- | -- | -- | -- | -- |
| 119.16 | 0.511 | 9.59 | -- | 0.351 | -- | -- | -- | -0.123 | 23.1 | -- | -- | -- | -- |
| 112.72 | 0.496 | 9.56 | -- | -- | -0.761 | -- | -- | -0.0147 | -- | 20.4 | 18 | -- | -- |
| 126.86 | 0.526 | 9.58 | -- | -- | -- | -- | -- | -0.121 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 56.15 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 18 | 5 |
| 2 | 56.16 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 18 | 12 |
| 3 | 56.18 | wind | 9.0 | 43200 | < th | dose independent | rect. | 18 | 3 |
| 5 | 56.24 | wind | 9.0 | 43200 | > th | dose independent | rect. | 18 | 4 |
| 9 | 56.86 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 18 | 7 |
| 17 | 57.49 | wind | 9.0 | 43200 | > th | dose independent | rect. | 18 | 7 |
| 21 | 57.89 | wind | 9.0 | 43200 | > th | dose independent | rect. | 18 | 10 |
| 26 | 58.28 | wind | 9.0 | 43200 | < th | dose independent | rect. | 18 | 7 |
| 61 | 60.24 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 20 | 19 |
| 71 | 60.57 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 17 | 1 |
| 72 | 60.60 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 21 | 18 |
| 75 | 60.64 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 17 | 23 |
| 96 | 60.92 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 22 | 22 |
| 107 | 61.08 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 112 | 61.18 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 13 | 16 |
| 113 | 61.19 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 24 | 21 |
| 117 | 61.21 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 12 | 21 |
| 140 | 61.35 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 2 | 22 |
| 159 | 61.42 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 10 | 23 |
| 188 | 61.55 | temperature | 20.0 | 1440 | > th | dose dependent | sin | 15 | NA |
| 196 | 61.57 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 17 | 2 |
| 257 | 61.80 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 264 | 61.82 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 15 | 21 |
| 273 | 61.85 | temperature | 15.0 | 720 | > th | dose dependent | no | NA | NA |
| 293 | 61.90 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 295 | 61.92 | temperature | 20.0 | 720 | > th | dose dependent | sin | 8 | NA |
| 330 | 62.06 | temperature | 20.0 | 10 | > th | dose dependent | no | NA | NA |
| 365 | 62.15 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 20 | 5 |
| 393 | 62.22 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 1 | 15 |
| 487 | 62.43 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 488 | 62.43 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 6 | 23 |
| 557 | 62.64 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 20 | 2 |
| 566 | 62.65 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 3 | 19 |
| 604 | 62.72 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 654 | 62.81 | temperature | 10.0 | 4320 | > th | dose dependent | rect. | 24 | 1 |
| 683 | 62.85 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 15 | 11 |
| 697 | 62.87 | temperature | 30.0 | 4320 | < th | dose dependent | rect. | 1 | 1 |
| 699 | 62.87 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 13 | 13 |
| 744 | 62.93 | temperature | 30.0 | 720 | < th | dose dependent | no | NA | NA |
| 819 | 63.01 | temperature | 10.0 | 720 | > th | dose dependent | sin | 5 | NA |
| 827 | 63.02 | temperature | 30.0 | 1440 | < th | dose dependent | sin | 16 | NA |
| 857 | 63.04 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 5 | 23 |