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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0564800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Disease resistance protein family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.3 (0.0264) R2 : 0.00719
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.101 (0.0556) R2dN8 : 0.00928 R2N8 : 0.00719
σ : 0.497
deviance : 113.6
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
100.39 0.471 3.35 -0.657 0.203 0.256 -0.343 -0.792 -0.247 21 20.5 665 -- --
101.7 0.47 3.33 -0.517 0.225 0.35 -0.706 -- -0.209 21.4 20.59 335 -- --
100.67 0.467 3.35 -0.673 0.211 0.243 -- -0.936 -0.253 20.4 20.53 698 -- --
103.14 0.473 3.33 -0.472 0.226 0.331 -- -- -0.204 21.3 20.6 338 -- --
102.91 0.472 3.35 -0.689 -- 0.291 -- -0.885 -0.263 -- 20.7 675 -- --
105.37 0.481 3.31 -0.396 0.234 -- -0.6 -- -0.142 21.3 -- -- -- --
106.57 0.483 3.31 -0.372 0.244 -- -- -- -0.14 20.7 -- -- -- --
105.37 0.478 3.33 -0.516 -- 0.377 -- -- -0.23 -- 20.7 681 -- --
108.61 0.488 3.31 -- 0.267 0.19 -- -- -0.13 21.2 20.5 306 -- --
109.94 0.49 3.31 -0.373 -- -- -- -- -0.142 -- -- -- -- --
110.22 0.491 3.3 -- 0.245 -- -- -- -0.0989 20.6 -- -- -- --
109.64 0.488 3.3 -- -- 0.391 -- -- -0.121 -- 29.2 629 -- --
113.6 0.497 3.3 -- -- -- -- -- -0.101 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 95.20 humidity 50 30 < th dose independent rect. 17 21
3 95.21 humidity 50 30 < th dose dependent rect. 17 19
5 95.24 humidity 50 30 < th dose independent rect. 17 19
9 96.42 radiation 10 30 > th dose independent rect. 17 14
10 96.89 temperature 25 10 > th dose dependent rect. 17 15
14 97.35 radiation 10 30 > th dose dependent rect. 17 14
16 97.82 radiation 1 30 > th dose dependent rect. 17 1
30 98.10 humidity 60 30 < th dose dependent rect. 17 1
33 98.29 temperature 25 30 > th dose dependent sin 11 NA
36 98.39 atmosphere 1005 270 > th dose independent rect. 15 12
37 98.40 humidity 70 14400 < th dose independent rect. 13 1
56 98.48 humidity 70 14400 < th dose independent rect. 12 3
57 98.49 atmosphere 1005 270 > th dose independent sin 14 NA
72 98.73 atmosphere 1005 720 > th dose independent rect. 16 9
78 98.77 humidity 70 14400 > th dose independent rect. 11 4
80 98.81 humidity 70 14400 > th dose independent rect. 12 2
97 99.00 humidity 50 30 < th dose independent sin 8 NA
108 99.05 atmosphere 1005 270 < th dose independent rect. 16 10
121 99.12 temperature 25 90 > th dose dependent rect. 19 13
130 99.17 temperature 25 10 > th dose dependent rect. 17 10
141 99.24 humidity 80 14400 > th dose independent rect. 19 1
156 99.25 atmosphere 995 43200 > th dose independent rect. 4 5
159 99.27 atmosphere 995 43200 > th dose independent rect. 1 10
160 99.27 atmosphere 1005 270 < th dose independent rect. 16 15
164 99.28 atmosphere 995 43200 > th dose independent rect. 5 3
165 99.28 atmosphere 995 43200 < th dose independent rect. 2 8
166 99.28 atmosphere 995 43200 < th dose dependent rect. 4 4
171 99.29 atmosphere 995 43200 > th dose independent rect. 2 8
172 99.29 atmosphere 995 43200 < th dose independent rect. 1 10
175 99.30 atmosphere 995 43200 > th dose independent rect. 24 12
184 99.30 atmosphere 995 43200 < th dose dependent rect. 1 8
203 99.32 atmosphere 995 43200 < th dose independent rect. 24 12
204 99.32 atmosphere 1005 270 < th dose independent rect. 16 13
211 99.33 atmosphere 995 43200 < th dose dependent sin 9 NA
212 99.34 humidity 50 30 < th dose independent rect. 17 1
245 99.35 atmosphere 995 43200 < th dose independent rect. 3 6
257 99.36 atmosphere 995 43200 < th dose independent rect. 5 3
274 99.40 humidity 80 14400 > th dose independent rect. 18 3
278 99.40 atmosphere 995 43200 < th dose independent rect. 22 15
281 99.40 atmosphere 995 43200 < th dose dependent rect. 21 13
314 99.45 humidity 80 14400 < th dose independent rect. 19 1
315 99.45 radiation 10 30 > th dose independent rect. 17 1
339 99.48 humidity 80 14400 < th dose independent rect. 18 3
362 99.52 humidity 70 14400 > th dose independent sin 23 NA
395 99.55 atmosphere 995 43200 > th dose independent rect. 21 17
404 99.56 humidity 60 14400 > th dose dependent rect. 8 6
405 99.56 atmosphere 1010 30 < th dose dependent rect. 19 10
422 99.57 humidity 50 14400 > th dose dependent rect. 12 2
440 99.60 radiation 20 90 > th dose dependent rect. 16 1
470 99.62 humidity 70 14400 > th dose dependent rect. 8 2
478 99.63 radiation 30 14400 < th dose independent rect. 17 1
490 99.65 atmosphere 995 43200 < th dose independent sin 7 NA
505 99.65 wind 1 43200 < th dose dependent rect. 7 2
549 99.70 atmosphere 1000 43200 < th dose dependent rect. 5 6
553 99.71 humidity 80 14400 > th dose independent rect. 4 7
557 99.71 humidity 80 14400 < th dose independent rect. 17 19
591 99.73 atmosphere 1000 43200 < th dose dependent rect. 6 4
608 99.74 humidity 80 14400 > th dose independent rect. 17 19
623 99.76 humidity 70 14400 < th dose independent sin 23 NA
624 99.76 humidity 80 14400 < th dose independent rect. 7 4
666 99.78 humidity 60 14400 > th dose dependent sin 1 NA
675 99.79 atmosphere 995 43200 > th dose independent sin 6 NA
702 99.81 atmosphere 995 43200 > th dose independent sin 4 NA
724 99.81 atmosphere 995 43200 < th dose independent rect. 24 22
787 99.83 humidity 60 14400 > th dose dependent rect. 6 16
789 99.84 wind 1 43200 > th dose independent sin 5 NA
793 99.84 humidity 80 14400 < th dose independent rect. 5 6
831 99.85 humidity 80 14400 < th dose independent rect. 4 8
840 99.85 humidity 80 14400 < th dose dependent rect. 13 1
857 99.86 wind 1 43200 > th dose independent rect. 5 6
903 99.87 atmosphere 995 43200 > th dose independent rect. 7 21
936 99.88 atmosphere 995 43200 < th dose independent rect. 7 21
954 99.88 atmosphere 1010 30 < th dose dependent rect. 19 13
986 99.89 humidity 70 14400 > th dose dependent rect. 18 3
999 99.90 wind 1 43200 > th dose independent rect. 6 3