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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0563700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Virulence factor, pectin lyase fold family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.25 (0.0458) R2 : 0.247
β1 : -0.904 (0.168) R2dD : 0.0501 R2D : 0.0266
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.5 (0.221) R2dE : 0.0862 R2E : 0.115
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 5.85 (0.916) R2dD*E : 0.0732 R2D*E : 0.111
γ1 : -0.264 (0.098) R2dN8 : 0.0166 R2N8 : 0.0145
σ : 0.848
deviance : 331.23
__
_____
C
peak time of C : --
E
wheather : atmosphere
threshold : 999.6
memory length : 5590
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
312.88 0.831 3.24 -0.869 0.278 1.5 -2.4 5.77 -0.276 6.67 999.6 5617 -- --
335.69 0.853 3.28 -0.976 0.271 1.73 -2.45 -- -0.265 6.5 1001 5980 -- --
322.09 0.836 3.24 -0.889 0.391 1.48 -- 5.8 -0.265 9.92 999.6 5589 -- --
344.96 0.865 3.27 -1.02 0.404 1.71 -- -- -0.247 9.95 1001 5990 -- --
331.23 0.848 3.25 -0.904 -- 1.5 -- 5.85 -0.264 -- 999.6 5590 -- --
397.08 0.934 3.31 -0.788 0.305 -- -2.27 -- -0.402 6.81 -- -- -- --
405 0.942 3.3 -0.815 0.407 -- -- -- -0.391 9.85 -- -- -- --
350.42 0.872 3.28 -1.06 -- 1.6 -- -- -0.207 -- 998.4 12476 -- --
371.85 0.898 3.25 -- 0.4 1.57 -- -- -0.143 9.95 1001 6020 -- --
414.91 0.952 3.31 -0.82 -- -- -- -- -0.391 -- -- -- -- --
422.53 0.962 3.28 -- 0.41 -- -- -- -0.3 10 -- -- -- --
380.08 0.908 3.26 -- -- 1.3 -- -- -0.143 -- 997.5 12824 -- --
432.64 0.971 3.29 -- -- -- -- -- -0.3 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 305.80 humidity 90 1440 < th dose dependent rect. 3 1
2 307.08 wind 5 4320 > th dose dependent rect. 20 3
4 308.10 wind 7 4320 < th dose independent rect. 18 9
5 308.32 wind 7 4320 < th dose independent rect. 18 4
13 309.38 wind 7 4320 > th dose independent rect. 18 4
16 309.53 wind 5 4320 > th dose independent rect. 21 1
18 309.95 wind 7 4320 > th dose independent rect. 18 9
34 312.62 wind 7 4320 > th dose dependent rect. 18 9
36 312.84 humidity 90 1440 < th dose dependent rect. 2 5
81 315.14 wind 9 4320 > th dose dependent rect. 20 6
143 317.17 atmosphere 995 14400 > th dose independent rect. 18 3
147 317.48 wind 7 1440 < th dose independent rect. 1 8
148 317.49 wind 7 1440 < th dose independent rect. 3 6
157 317.97 wind 7 1440 > th dose independent rect. 8 1
177 318.59 wind 7 1440 > th dose independent rect. 1 8
180 318.95 humidity 90 1440 < th dose dependent rect. 5 1
183 319.17 atmosphere 995 14400 > th dose independent rect. 18 1
190 320.09 atmosphere 995 14400 < th dose independent rect. 18 1
193 320.09 atmosphere 995 14400 < th dose dependent rect. 18 1
196 320.22 humidity 50 1440 > th dose dependent rect. 2 5
209 320.46 atmosphere 995 14400 > th dose independent rect. 18 21
224 320.71 atmosphere 995 14400 > th dose independent sin 12 NA
231 321.13 atmosphere 995 14400 < th dose independent rect. 18 21
232 321.20 atmosphere 995 14400 > th dose independent rect. 18 7
233 321.21 atmosphere 995 14400 < th dose dependent rect. 15 11
235 321.26 atmosphere 995 14400 < th dose dependent sin 16 NA
237 321.33 atmosphere 995 14400 < th dose independent sin 12 NA
240 321.38 atmosphere 995 14400 < th dose dependent rect. 1 18
245 321.38 atmosphere 995 14400 < th dose dependent rect. 4 22
246 321.39 atmosphere 995 14400 < th dose independent sin 5 NA
247 321.41 atmosphere 995 14400 < th dose dependent rect. 14 13
268 321.49 atmosphere 995 14400 > th dose independent sin 5 NA
330 321.86 humidity 70 1440 > th dose dependent rect. 3 1
332 321.88 atmosphere 995 14400 > th dose independent rect. 15 16
334 321.88 atmosphere 995 14400 > th dose independent rect. 15 19
338 321.89 atmosphere 995 14400 > th dose independent rect. 15 21
356 321.96 atmosphere 995 14400 < th dose independent rect. 21 20
361 321.99 atmosphere 995 14400 > th dose independent rect. 15 23
362 321.99 atmosphere 995 14400 < th dose dependent sin 2 NA
363 321.99 atmosphere 995 14400 < th dose dependent no NA NA
404 322.00 atmosphere 995 14400 > th dose independent rect. 13 19
439 322.14 atmosphere 995 14400 > th dose independent rect. 11 20
444 322.15 atmosphere 995 14400 < th dose independent rect. 15 15
456 322.15 atmosphere 995 14400 > th dose independent rect. 9 23
467 322.16 atmosphere 995 14400 > th dose independent no NA NA
476 322.17 atmosphere 995 14400 < th dose independent no NA NA
547 322.29 atmosphere 995 14400 > th dose independent rect. 2 23
548 322.29 atmosphere 995 14400 > th dose independent rect. 4 23
549 322.29 atmosphere 995 14400 > th dose independent rect. 24 23
571 322.32 atmosphere 995 14400 < th dose independent rect. 1 23
590 322.38 atmosphere 995 14400 < th dose independent rect. 18 6
741 322.72 atmosphere 995 14400 > th dose independent rect. 17 14
755 322.75 atmosphere 995 14400 > th dose independent rect. 17 17
766 322.80 atmosphere 995 14400 > th dose independent rect. 10 11
969 323.45 wind 7 1440 < th dose independent rect. 8 1
999 323.57 atmosphere 995 14400 < th dose independent rect. 17 12