Os12g0563200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Lozenge protein.
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Os12g0563200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Lozenge protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 89.49 | 0.444 | 12.1 | -0.295 | 1.81 | 1.29 | -0.691 | -0.146 | -0.468 | 20.2 | 25.4 | 30 | -- | -- |
| 89.5 | 0.441 | 12.1 | -0.282 | 1.81 | 1.29 | -0.684 | -- | -0.464 | 20.2 | 25.4 | 29 | -- | -- |
| 90.94 | 0.444 | 12.1 | -0.282 | 1.81 | 1.28 | -- | -0.131 | -0.472 | 20.2 | 25.4 | 29 | -- | -- |
| 90.94 | 0.444 | 12.1 | -0.257 | 1.82 | 1.26 | -- | -- | -0.464 | 20.2 | 25.4 | 29 | -- | -- |
| 197.4 | 0.654 | 12.1 | -0.788 | -- | 2.29 | -- | -2.22 | -0.667 | -- | 24.3 | 488 | -- | -- |
| 114.17 | 0.501 | 12.1 | -0.077 | 1.99 | -- | -0.46 | -- | -0.382 | 19.3 | -- | -- | -- | -- |
| 114.74 | 0.502 | 12.1 | -0.0669 | 1.99 | -- | -- | -- | -0.383 | 19.3 | -- | -- | -- | -- |
| 200.59 | 0.66 | 12.1 | -0.471 | -- | 2.06 | -- | -- | -0.619 | -- | 24.28 | 476 | -- | -- |
| 92.62 | 0.448 | 12.1 | -- | 1.82 | 1.21 | -- | -- | -0.431 | 20.1 | 25.4 | 29 | -- | -- |
| 323.8 | 0.841 | 12 | -0.102 | -- | -- | -- | -- | -0.417 | -- | -- | -- | -- | -- |
| 114.86 | 0.501 | 12.1 | -- | 1.99 | -- | -- | -- | -0.375 | 19.3 | -- | -- | -- | -- |
| 206.25 | 0.669 | 12 | -- | -- | 2 | -- | -- | -0.562 | -- | 24.3 | 466 | -- | -- |
| 324.07 | 0.84 | 12 | -- | -- | -- | -- | -- | -0.405 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 80.97 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 16 |
| 2 | 81.44 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 12 |
| 3 | 81.48 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 14 |
| 7 | 81.97 | temperature | 20 | 270 | > th | dose dependent | sin | 4 | NA |
| 9 | 82.47 | temperature | 10 | 270 | > th | dose dependent | rect. | 7 | 10 |
| 11 | 82.78 | temperature | 20 | 270 | > th | dose dependent | rect. | 7 | 8 |
| 20 | 83.09 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 21 |
| 25 | 83.31 | temperature | 15 | 10 | > th | dose dependent | rect. | 8 | 21 |
| 51 | 84.24 | temperature | 25 | 270 | < th | dose independent | rect. | 3 | 10 |
| 70 | 84.68 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 12 |
| 83 | 84.96 | temperature | 20 | 270 | > th | dose dependent | rect. | 23 | 15 |
| 103 | 85.40 | temperature | 25 | 270 | > th | dose independent | rect. | 23 | 16 |
| 110 | 85.45 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 10 |
| 115 | 85.53 | temperature | 25 | 270 | > th | dose independent | sin | 4 | NA |
| 135 | 85.76 | temperature | 25 | 270 | < th | dose independent | rect. | 3 | 16 |
| 144 | 85.85 | temperature | 30 | 270 | < th | dose dependent | sin | 3 | NA |
| 150 | 85.91 | temperature | 25 | 10 | > th | dose dependent | rect. | 8 | 14 |
| 188 | 86.36 | temperature | 25 | 270 | > th | dose independent | rect. | 7 | 8 |
| 226 | 86.78 | temperature | 25 | 270 | < th | dose independent | sin | 4 | NA |
| 264 | 87.10 | temperature | 25 | 270 | > th | dose dependent | rect. | 17 | 21 |
| 284 | 87.29 | temperature | 20 | 720 | > th | dose dependent | rect. | 8 | 1 |
| 304 | 87.46 | atmosphere | 995 | 10 | > th | dose dependent | rect. | 5 | 18 |
| 341 | 87.73 | temperature | 20 | 720 | > th | dose dependent | rect. | 7 | 3 |
| 572 | 89.02 | temperature | 25 | 30 | > th | dose dependent | rect. | 23 | 21 |
| 596 | 89.12 | temperature | 25 | 30 | > th | dose dependent | rect. | 23 | 23 |
| 600 | 89.13 | temperature | 25 | 30 | > th | dose dependent | rect. | 21 | 23 |
| 639 | 89.30 | temperature | 25 | 720 | > th | dose independent | rect. | 8 | 2 |
| 697 | 89.57 | temperature | 25 | 720 | > th | dose independent | rect. | 7 | 4 |
| 723 | 89.65 | temperature | 25 | 30 | > th | dose dependent | no | NA | NA |
| 728 | 89.66 | temperature | 25 | 30 | > th | dose dependent | rect. | 3 | 23 |
| 860 | 89.99 | temperature | 25 | 30 | > th | dose dependent | rect. | 3 | 17 |
| 880 | 90.03 | atmosphere | 1015 | 10 | < th | dose dependent | rect. | 8 | 21 |