Os12g0562900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Prefoldin domain containing protein.
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Os12g0562900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Prefoldin domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 37.31 | 0.287 | 12.2 | 0.737 | 0.214 | -0.948 | 0.418 | 0.728 | 0.159 | 22.7 | 28.74 | 112 | -- | -- |
| 37.51 | 0.285 | 12.1 | 0.858 | 0.187 | -0.988 | 0.551 | -- | 0.175 | 22.3 | 26.64 | 183 | -- | -- |
| 37.94 | 0.287 | 12.2 | 0.675 | 0.21 | -0.94 | -- | 0.978 | 0.148 | 22.6 | 28.75 | 120 | -- | -- |
| 38.61 | 0.289 | 12.1 | 0.85 | 0.181 | -0.946 | -- | -- | 0.188 | 20.9 | 26.16 | 184 | -- | -- |
| 39.41 | 0.292 | 12.1 | 0.625 | -- | -0.887 | -- | 0.978 | 0.168 | -- | 27.53 | 231 | -- | -- |
| 51.64 | 0.337 | 12.1 | 1.09 | 0.285 | -- | 0.0256 | -- | 0.389 | 18 | -- | -- | -- | -- |
| 51.64 | 0.337 | 12.1 | 1.09 | 0.285 | -- | -- | -- | 0.39 | 17.9 | -- | -- | -- | -- |
| 39.81 | 0.294 | 12.1 | 0.836 | -- | -0.958 | -- | -- | 0.176 | -- | 26.69 | 253 | -- | -- |
| 39.21 | 0.292 | 12.2 | -- | 0.299 | -1.21 | -- | -- | 0.0892 | 17.9 | 19.53 | 29008 | -- | -- |
| 55.85 | 0.349 | 12.1 | 1.08 | -- | -- | -- | -- | 0.383 | -- | -- | -- | -- | -- |
| 82.7 | 0.425 | 12.1 | -- | 0.269 | -- | -- | -- | 0.269 | 18.1 | -- | -- | -- | -- |
| 43.41 | 0.307 | 12.2 | -- | -- | -1.18 | -- | -- | 0.0611 | -- | 19.64 | 29074 | -- | -- |
| 86.45 | 0.434 | 12.1 | -- | -- | -- | -- | -- | 0.263 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 35.38 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 22 |
| 5 | 36.02 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 17 |
| 6 | 36.05 | temperature | 15 | 270 | > th | dose dependent | rect. | 16 | 22 |
| 14 | 36.39 | humidity | 60 | 43200 | < th | dose dependent | rect. | 6 | 3 |
| 22 | 36.63 | humidity | 50 | 43200 | < th | dose independent | rect. | 6 | 4 |
| 23 | 36.63 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 6 |
| 24 | 36.63 | temperature | 20 | 4320 | < th | dose independent | rect. | 17 | 8 |
| 29 | 36.65 | humidity | 50 | 43200 | < th | dose independent | rect. | 8 | 2 |
| 32 | 36.67 | humidity | 60 | 43200 | < th | dose dependent | rect. | 23 | 10 |
| 33 | 36.67 | temperature | 30 | 90 | < th | dose dependent | rect. | 14 | 21 |
| 43 | 36.70 | humidity | 50 | 43200 | > th | dose independent | rect. | 6 | 4 |
| 44 | 36.70 | humidity | 50 | 43200 | > th | dose independent | rect. | 22 | 12 |
| 52 | 36.73 | temperature | 30 | 270 | < th | dose dependent | rect. | 15 | 15 |
| 57 | 36.74 | humidity | 50 | 43200 | > th | dose independent | rect. | 1 | 9 |
| 73 | 36.77 | temperature | 20 | 4320 | > th | dose independent | rect. | 17 | 8 |
| 87 | 36.83 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 6 |
| 116 | 36.92 | temperature | 25 | 4320 | < th | dose dependent | rect. | 20 | 1 |
| 118 | 36.92 | temperature | 30 | 90 | < th | dose dependent | rect. | 17 | 15 |
| 160 | 37.01 | humidity | 50 | 43200 | < th | dose dependent | rect. | 21 | 14 |
| 181 | 37.05 | temperature | 20 | 4320 | < th | dose independent | sin | 15 | NA |
| 217 | 37.12 | temperature | 20 | 4320 | > th | dose independent | sin | 15 | NA |
| 246 | 37.18 | humidity | 60 | 43200 | < th | dose independent | sin | 9 | NA |
| 262 | 37.19 | temperature | 30 | 90 | < th | dose dependent | rect. | 21 | 23 |
| 265 | 37.20 | humidity | 60 | 43200 | < th | dose dependent | sin | 9 | NA |
| 421 | 37.39 | humidity | 60 | 43200 | < th | dose dependent | rect. | 20 | 18 |
| 426 | 37.40 | humidity | 60 | 43200 | < th | dose dependent | rect. | 1 | 13 |
| 441 | 37.41 | humidity | 60 | 43200 | < th | dose dependent | rect. | 3 | 11 |
| 443 | 37.42 | humidity | 60 | 43200 | > th | dose independent | sin | 9 | NA |
| 448 | 37.42 | temperature | 15 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 458 | 37.44 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 2 |
| 471 | 37.45 | humidity | 60 | 43200 | < th | dose dependent | rect. | 6 | 8 |
| 588 | 37.56 | temperature | 15 | 270 | > th | dose dependent | sin | 10 | NA |
| 589 | 37.56 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 594 | 37.56 | temperature | 15 | 90 | > th | dose dependent | rect. | 6 | 23 |
| 614 | 37.57 | temperature | 30 | 90 | < th | dose dependent | rect. | 1 | 23 |
| 714 | 37.67 | temperature | 15 | 90 | > th | dose dependent | rect. | 8 | 23 |
| 745 | 37.70 | temperature | 30 | 10 | < th | dose dependent | rect. | 14 | 22 |
| 866 | 37.82 | temperature | 15 | 10 | > th | dose dependent | rect. | 8 | 21 |