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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0561900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.69 (0.0458) R2 : 0.644
β1 : -4.1 (0.168) R2dD : 0.486 R2D : 0.544
β2 : 1.58 (0.215) R2dC : 0.14 R2C : -0.193
β3 : -3 (0.298) R2dE : 0.266 R2E : -0.00434
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.287 (0.0982) R2dN8 : 0.00911 R2N8 : 0.034
σ : 0.856
deviance : 337.78
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_____
C
peak time of C : 4.63
E
wheather : humidity
threshold : 70
memory length : 592
response mode : > th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 8.54
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
335.9 0.861 5.69 -4.14 1.65 -3.12 -0.0253 1.05 0.289 4.5 69 593 8.62 --
336.63 0.855 5.7 -4.1 1.57 -3.05 0.688 -- 0.283 4.41 69.94 588 8.71 --
335.89 0.854 5.69 -4.13 1.65 -3.13 -- 1.05 0.286 4.51 69.25 589 8.58 --
337.78 0.856 5.69 -4.1 1.58 -3 -- -- 0.287 4.63 70 592 8.54 --
369.88 0.896 5.71 -4.15 -- -1.89 -- 0.793 0.232 -- 72 1604 7.6 --
412.43 0.952 5.69 -4.22 0.251 -- -0.406 -- 0.384 14.6 -- -- -- --
412.98 0.952 5.7 -4.23 0.254 -- -- -- 0.382 15 -- -- -- --
367.18 0.892 5.72 -3.99 -- -1.63 -- -- 0.258 -- 76.16 1799 10.8 --
758.78 1.28 5.64 -- 1.27 -2.99 -- -- 0.58 4.28 80.91 431 8.11 --
416.68 0.954 5.7 -4.24 -- -- -- -- 0.376 -- -- -- -- --
884.63 1.39 5.59 -- 0.337 -- -- -- 0.853 15 -- -- -- --
766.82 1.29 5.69 -- -- -2.25 -- -- 0.479 -- 82.74 1736 9.86 --
891.14 1.39 5.59 -- -- -- -- -- 0.846 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 340.13 humidity 70 720 > th dose dependent rect. 14 16
7 340.83 humidity 70 720 > th dose dependent sin 15 NA
9 341.22 humidity 80 720 > th dose dependent rect. 15 9
39 342.98 humidity 80 720 > th dose dependent rect. 10 14
44 343.20 humidity 90 720 < th dose independent rect. 14 11
156 346.41 humidity 90 720 < th dose independent sin 17 NA
159 346.52 humidity 90 720 < th dose dependent sin 13 NA
242 348.49 humidity 90 720 < th dose dependent rect. 15 17
248 348.64 humidity 90 720 < th dose dependent rect. 15 13
250 348.67 humidity 90 720 < th dose dependent rect. 15 15
279 349.07 humidity 90 270 < th dose independent rect. 16 16
288 349.27 humidity 90 720 > th dose independent rect. 10 14
309 349.67 humidity 90 720 < th dose independent rect. 9 17
313 349.72 humidity 90 720 < th dose independent rect. 11 15
321 349.84 humidity 90 720 > th dose independent rect. 13 11
339 350.13 humidity 80 720 > th dose independent rect. 15 7
348 350.29 humidity 90 270 < th dose independent rect. 15 18
360 350.47 humidity 80 720 > th dose dependent rect. 2 22
412 351.22 humidity 90 720 < th dose independent rect. 7 19
430 351.39 humidity 90 90 < th dose independent rect. 16 20
490 352.28 humidity 80 720 > th dose independent rect. 14 16
562 352.93 humidity 90 720 > th dose independent sin 18 NA
700 354.50 humidity 80 720 > th dose dependent rect. 5 23
720 354.71 humidity 80 720 > th dose dependent no NA NA
721 354.71 humidity 90 720 < th dose dependent rect. 20 5
757 355.09 humidity 80 90 > th dose dependent rect. 5 23
822 355.65 humidity 70 720 > th dose dependent rect. 16 23
824 355.68 humidity 90 90 > th dose independent rect. 5 23
841 355.78 humidity 80 90 > th dose dependent rect. 15 19
846 355.80 humidity 80 90 > th dose dependent rect. 17 17
847 355.81 humidity 80 720 < th dose independent rect. 15 4