Os12g0560900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, putative npRNA.
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Os12g0560900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, putative npRNA.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 95.61 | 0.459 | 15.7 | 0.538 | 1.95 | 0.695 | 0.0483 | -0.0121 | 0.418 | 20.9 | 21.39 | 1961 | -- | -- |
| 95.6 | 0.455 | 15.7 | 0.539 | 1.95 | 0.697 | 0.0472 | -- | 0.418 | 20.9 | 21.37 | 1988 | -- | -- |
| 95.6 | 0.455 | 15.7 | 0.535 | 1.95 | 0.697 | -- | -0.0116 | 0.417 | 20.9 | 21.39 | 1989 | -- | -- |
| 95.6 | 0.455 | 15.7 | 0.537 | 1.95 | 0.697 | -- | -- | 0.418 | 20.9 | 21.39 | 1988 | -- | -- |
| 236.86 | 0.717 | 15.7 | 0.203 | -- | 1.36 | -- | -1.07 | 0.211 | -- | 26 | 637 | -- | -- |
| 109.09 | 0.49 | 15.6 | 0.86 | 1.99 | -- | 0.0719 | -- | 0.62 | 21 | -- | -- | -- | -- |
| 109.11 | 0.489 | 15.6 | 0.858 | 1.99 | -- | -- | -- | 0.62 | 21 | -- | -- | -- | -- |
| 237.07 | 0.717 | 15.7 | 0.387 | -- | 1.42 | -- | -- | 0.144 | -- | 25.3 | 628 | -- | -- |
| 101 | 0.468 | 15.7 | -- | 1.97 | 0.959 | -- | -- | 0.306 | 20.9 | 20.67 | 3961 | -- | -- |
| 335.47 | 0.856 | 15.6 | 0.859 | -- | -- | -- | -- | 0.607 | -- | -- | -- | -- | -- |
| 128.49 | 0.53 | 15.7 | -- | 1.99 | -- | -- | -- | 0.524 | 21 | -- | -- | -- | -- |
| 241.31 | 0.723 | 15.7 | -- | -- | 1.49 | -- | -- | 0.0292 | -- | 25.3 | 640 | -- | -- |
| 354.94 | 0.879 | 15.6 | -- | -- | -- | -- | -- | 0.511 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 90.09 | temperature | 20.0 | 30 | > th | dose independent | rect. | 12 | 16 |
| 6 | 91.78 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 21 | 19 |
| 11 | 92.13 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 20 | 21 |
| 26 | 93.58 | temperature | 20.0 | 270 | > th | dose independent | rect. | 21 | 20 |
| 28 | 93.66 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 21 | 2 |
| 32 | 93.80 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 21 | 2 |
| 40 | 93.98 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 12 | 16 |
| 41 | 93.99 | temperature | 20.0 | 270 | > th | dose independent | rect. | 21 | 7 |
| 58 | 94.52 | temperature | 20.0 | 270 | > th | dose independent | rect. | 21 | 9 |
| 80 | 94.94 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 21 | 7 |
| 90 | 95.06 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 21 | 10 |
| 96 | 95.10 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 21 | 7 |
| 99 | 95.11 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 21 | 9 |
| 108 | 95.15 | temperature | 20.0 | 30 | > th | dose independent | rect. | 23 | 5 |
| 127 | 95.24 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 11 | 15 |
| 163 | 95.44 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 1 | 1 |
| 177 | 95.49 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 1 | 1 |
| 191 | 95.56 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 205 | 95.59 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 223 | 95.67 | temperature | 15.0 | 1440 | > th | dose dependent | rect. | 24 | 3 |
| 242 | 95.77 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 262 | 95.83 | temperature | 20.0 | 30 | > th | dose independent | rect. | 1 | 3 |
| 271 | 95.87 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 279 | 95.88 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 1 | 2 |
| 300 | 95.96 | temperature | 20.0 | 1440 | > th | dose independent | sin | 10 | NA |
| 339 | 96.06 | temperature | 20.0 | 10 | > th | dose independent | rect. | 12 | 18 |
| 356 | 96.09 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 16 | 19 |
| 364 | 96.12 | temperature | 20.0 | 1440 | < th | dose independent | sin | 10 | NA |
| 483 | 96.43 | temperature | 20.0 | 10 | > th | dose independent | rect. | 23 | 20 |
| 568 | 96.60 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 1 | 16 |
| 578 | 96.62 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 21 | 10 |
| 742 | 96.95 | temperature | 25.0 | 1440 | < th | dose dependent | sin | 11 | NA |
| 796 | 97.03 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 2 | 10 |
| 804 | 97.03 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 2 | 10 |
| 837 | 97.09 | temperature | 20.0 | 4320 | > th | dose independent | sin | 16 | NA |
| 916 | 97.20 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 1 | 22 |
| 998 | 97.32 | temperature | 20.0 | 270 | > th | dose independent | rect. | 10 | 22 |