Os12g0560200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Lipoxygenase (EC 1.13.11.12).
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Os12g0560200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Lipoxygenase (EC 1.13.11.12).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 415.05 | 0.957 | 11.3 | -0.0769 | 2.01 | 3.33 | -1.04 | 0.936 | 1.09 | 23.8 | 8.7 | 1279 | -- | -- |
| 415.1 | 0.949 | 11.3 | -0.0971 | 2 | 3.15 | -1.03 | -- | 1.09 | 23.8 | 8.7 | 1278 | -- | -- |
| 419.65 | 0.954 | 11.3 | -0.0391 | 2.01 | 3.3 | -- | 0.66 | 1.09 | 23.9 | 8.706 | 1279 | -- | -- |
| 419.66 | 0.954 | 11.3 | -0.0615 | 2.02 | 3.17 | -- | -- | 1.1 | 23.9 | 8.7 | 1279 | -- | -- |
| 561.09 | 1.1 | 11.2 | 0.446 | -- | 3.77 | -- | -3.45 | 0.893 | -- | 2.12 | 839 | -- | -- |
| 499.35 | 1.05 | 11.3 | -0.561 | 2.07 | -- | -1.22 | -- | 0.894 | 23.8 | -- | -- | -- | -- |
| 505.65 | 1.05 | 11.3 | -0.514 | 2.07 | -- | -- | -- | 0.898 | 23.9 | -- | -- | -- | -- |
| 567.26 | 1.11 | 11.2 | 0.439 | -- | 4.11 | -- | -- | 0.983 | -- | 3.045 | 830 | -- | -- |
| 419.71 | 0.954 | 11.3 | -- | 2.02 | 3.19 | -- | -- | 1.1 | 23.9 | 8.7 | 1279 | -- | -- |
| 775.79 | 1.3 | 11.3 | -0.451 | -- | -- | -- | -- | 0.926 | -- | -- | -- | -- | -- |
| 512.61 | 1.06 | 11.3 | -- | 2.07 | -- | -- | -- | 0.956 | 23.9 | -- | -- | -- | -- |
| 571.88 | 1.11 | 11.3 | -- | -- | 3.92 | -- | -- | 0.934 | -- | 3.017 | 830 | -- | -- |
| 781.15 | 1.3 | 11.2 | -- | -- | -- | -- | -- | 0.976 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 408.78 | wind | 9 | 1440 | > th | dose dependent | rect. | 12 | 4 |
| 2 | 410.01 | wind | 9 | 1440 | > th | dose independent | rect. | 12 | 4 |
| 3 | 410.33 | wind | 9 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 5 | 410.68 | wind | 9 | 1440 | < th | dose independent | rect. | 13 | 1 |
| 8 | 411.65 | wind | 9 | 1440 | < th | dose independent | rect. | 12 | 4 |
| 12 | 412.41 | wind | 9 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 25 | 414.08 | wind | 9 | 1440 | > th | dose dependent | rect. | 20 | 20 |
| 31 | 414.49 | wind | 9 | 1440 | > th | dose independent | rect. | 20 | 20 |
| 38 | 414.92 | wind | 9 | 1440 | < th | dose independent | rect. | 22 | 19 |
| 39 | 414.94 | wind | 9 | 1440 | > th | dose dependent | rect. | 1 | 15 |
| 58 | 415.19 | wind | 9 | 1440 | < th | dose independent | rect. | 24 | 17 |
| 59 | 415.21 | wind | 9 | 1440 | < th | dose independent | rect. | 17 | 23 |
| 66 | 415.30 | wind | 9 | 1440 | < th | dose independent | rect. | 19 | 22 |
| 69 | 415.39 | wind | 9 | 1440 | < th | dose independent | rect. | 7 | 10 |
| 96 | 415.75 | wind | 9 | 1440 | > th | dose independent | rect. | 1 | 16 |
| 99 | 415.75 | wind | 9 | 1440 | > th | dose dependent | rect. | 11 | 12 |
| 103 | 415.76 | wind | 9 | 1440 | > th | dose dependent | rect. | 11 | 10 |
| 105 | 415.77 | wind | 9 | 1440 | > th | dose dependent | sin | 23 | NA |
| 114 | 415.78 | wind | 9 | 1440 | < th | dose independent | sin | 23 | NA |
| 118 | 415.85 | wind | 9 | 1440 | < th | dose independent | rect. | 11 | 9 |
| 137 | 416.06 | wind | 9 | 1440 | < th | dose independent | rect. | 11 | 15 |
| 141 | 416.09 | wind | 9 | 1440 | < th | dose independent | rect. | 22 | 23 |
| 142 | 416.10 | wind | 9 | 1440 | > th | dose independent | sin | 23 | NA |
| 157 | 416.21 | wind | 9 | 1440 | < th | dose independent | rect. | 24 | 21 |
| 160 | 416.24 | wind | 9 | 1440 | < th | dose independent | rect. | 7 | 14 |
| 165 | 416.26 | wind | 9 | 1440 | < th | dose independent | rect. | 11 | 21 |
| 180 | 416.32 | wind | 9 | 1440 | < th | dose independent | rect. | 7 | 19 |
| 183 | 416.33 | wind | 9 | 1440 | < th | dose independent | rect. | 5 | 22 |
| 231 | 416.50 | wind | 9 | 1440 | > th | dose independent | rect. | 10 | 13 |
| 299 | 416.67 | wind | 9 | 1440 | > th | dose dependent | rect. | 22 | 23 |
| 306 | 416.70 | wind | 9 | 1440 | < th | dose independent | no | NA | NA |
| 311 | 416.71 | wind | 9 | 1440 | > th | dose independent | rect. | 11 | 10 |
| 329 | 416.77 | wind | 9 | 1440 | > th | dose independent | rect. | 22 | 23 |
| 381 | 416.84 | wind | 9 | 1440 | > th | dose dependent | no | NA | NA |
| 448 | 416.89 | wind | 9 | 1440 | > th | dose independent | no | NA | NA |
| 527 | 417.03 | wind | 9 | 43200 | > th | dose dependent | rect. | 15 | 1 |
| 563 | 417.18 | wind | 9 | 1440 | < th | dose independent | rect. | 15 | 23 |
| 565 | 417.19 | wind | 9 | 1440 | > th | dose dependent | rect. | 15 | 23 |
| 585 | 417.43 | wind | 9 | 1440 | > th | dose independent | rect. | 15 | 23 |
| 610 | 417.53 | wind | 5 | 720 | > th | dose dependent | rect. | 19 | 19 |
| 613 | 417.60 | wind | 5 | 720 | < th | dose independent | rect. | 20 | 18 |
| 690 | 418.71 | wind | 9 | 43200 | > th | dose dependent | rect. | 12 | 1 |
| 713 | 419.05 | radiation | 30 | 4320 | < th | dose independent | rect. | 8 | 1 |
| 722 | 419.31 | wind | 7 | 720 | < th | dose independent | sin | 8 | NA |
| 747 | 420.02 | wind | 7 | 720 | > th | dose dependent | sin | 8 | NA |
| 759 | 420.32 | radiation | 40 | 43200 | < th | dose independent | rect. | 16 | 4 |
| 981 | 422.56 | radiation | 30 | 14400 | > th | dose independent | rect. | 7 | 1 |