FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0559500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Resistance protein T10rga2-1A.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.18 (0.0234) R2 : 0.00255
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0532 (0.0493) R2dN8 : 0.00329 R2N8 : 0.00255
σ : 0.441
deviance : 89.19
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
84.96 0.433 3.19 -0.106 0.0414 -0.362 -0.372 1.4 0.0375 21.9 1 16 -- --
86.57 0.433 3.18 -0.0555 0.0447 -0.259 -0.446 -- 0.0468 23.1 1.1 16 -- --
85.5 0.431 3.2 -0.0946 0.0441 -0.366 -- 1.47 0.0376 21.6 1.026 16 -- --
87.35 0.435 3.18 -0.0362 0.0391 -0.253 -- -- 0.0532 23.3 1 16 -- --
85.61 0.431 3.19 -0.0933 -- -0.362 -- 1.46 0.0376 -- 1.003 16 -- --
88.23 0.44 3.18 -0.0173 0.0735 -- -0.381 -- 0.0499 0.7 -- -- -- --
88.76 0.441 3.18 -0.00409 0.0863 -- -- -- 0.051 2.61 -- -- -- --
87.44 0.437 3.18 -0.0271 -- -0.22 -- -- 0.0552 -- 1.003 16 -- --
87.37 0.438 3.18 -- 0.0377 -0.209 -- -- 0.0576 23.8 1 16 -- --
89.19 0.441 3.18 -0.000417 -- -- -- -- 0.0532 -- -- -- -- --
88.76 0.441 3.18 -- 0.0862 -- -- -- 0.0515 2.61 -- -- -- --
87.46 0.437 3.18 -- -- -0.217 -- -- 0.0581 -- 1 16 -- --
89.19 0.441 3.18 -- -- -- -- -- 0.0532 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 73.38 radiation 10.0 43200 < th dose dependent rect. 3 1
3 73.45 radiation 1.0 4320 < th dose dependent rect. 3 1
16 73.51 wind 9.0 1440 < th dose independent rect. 3 1
17 73.51 temperature 10.0 1440 > th dose independent rect. 3 1
20 73.51 temperature 30.0 1440 < th dose independent rect. 3 1
24 73.51 humidity 50.0 1440 > th dose independent rect. 3 1
33 73.51 atmosphere 995.0 1440 > th dose independent rect. 3 1
34 73.51 radiation 1.0 1440 < th dose independent rect. 3 1
54 73.51 temperature 10.0 1440 > th dose independent rect. 4 23
62 73.69 atmosphere 1005.0 30 > th dose dependent rect. 2 1
63 73.73 temperature 25.0 90 > th dose independent rect. 2 1
64 73.73 temperature 20.0 30 > th dose dependent rect. 2 1
65 73.77 wind 3.0 30 < th dose dependent rect. 2 1
67 73.82 atmosphere 1005.0 30 > th dose independent rect. 2 1
71 73.85 wind 3.0 30 < th dose independent rect. 2 1
81 73.94 temperature 25.0 90 > th dose dependent rect. 1 3
82 73.95 humidity 80.0 30 > th dose independent rect. 2 1
84 73.96 temperature 10.0 30 > th dose independent rect. 2 1
86 73.96 temperature 25.0 30 < th dose independent rect. 2 1
88 73.96 humidity 50.0 30 > th dose independent rect. 2 1
92 73.96 atmosphere 1010.0 30 < th dose independent rect. 2 1
94 73.96 radiation 1.0 30 < th dose independent rect. 2 1
99 73.96 precipitation 0.1 30 < th dose independent rect. 2 1
100 73.96 temperature 10.0 30 > th dose independent rect. 3 23
101 73.96 humidity 50.0 30 > th dose dependent rect. 2 1
104 73.96 radiation 1.0 30 < th dose dependent rect. 2 1
109 73.96 precipitation 0.1 30 < th dose dependent rect. 2 1
113 74.09 atmosphere 995.0 30 > th dose independent rect. 3 23
119 74.18 atmosphere 1015.0 30 < th dose dependent rect. 2 1
123 74.31 temperature 30.0 30 < th dose dependent rect. 2 1
128 74.56 wind 1.0 30 > th dose independent rect. 2 1
133 74.64 precipitation 0.1 30 < th dose independent rect. 3 23
135 74.64 precipitation 0.1 30 < th dose dependent rect. 3 23
179 75.65 wind 9.0 30 < th dose independent rect. 3 23
203 78.15 humidity 50.0 30 > th dose independent rect. 3 23
205 78.29 temperature 20.0 10 < th dose independent rect. 19 1
211 78.29 temperature 20.0 10 < th dose dependent rect. 19 1
233 78.53 humidity 90.0 90 > th dose independent rect. 18 1
237 78.61 humidity 90.0 90 > th dose dependent rect. 18 1
298 80.35 wind 3.0 30 < th dose dependent rect. 20 1
301 80.43 humidity 90.0 90 < th dose independent rect. 2 1
306 80.53 temperature 10.0 30 > th dose dependent rect. 3 23
312 80.72 wind 1.0 30 < th dose independent rect. 24 3
319 80.84 temperature 30.0 30 < th dose independent rect. 3 23
328 80.95 humidity 90.0 30 > th dose dependent rect. 13 7
342 81.14 humidity 90.0 30 > th dose independent rect. 13 7
348 81.24 atmosphere 1015.0 30 < th dose independent rect. 3 23
391 81.71 wind 1.0 10 < th dose independent rect. 14 13
397 81.75 wind 1.0 10 < th dose independent rect. 17 10
443 82.24 wind 3.0 10 < th dose independent rect. 19 2
460 82.40 humidity 90.0 30 > th dose dependent rect. 9 12
481 82.56 wind 3.0 10 < th dose dependent rect. 13 14
492 82.67 temperature 25.0 1440 < th dose independent rect. 1 1
513 82.86 temperature 20.0 30 < th dose dependent rect. 12 9
533 82.94 wind 9.0 720 < th dose dependent rect. 2 1
557 83.04 humidity 90.0 270 > th dose dependent rect. 11 9
565 83.09 humidity 90.0 270 > th dose dependent rect. 16 4
573 83.11 wind 9.0 720 < th dose independent rect. 15 14
584 83.14 atmosphere 1000.0 10 > th dose independent rect. 14 12
592 83.15 atmosphere 1000.0 10 > th dose independent rect. 2 12
593 83.15 radiation 40.0 30 < th dose independent rect. 14 12
633 83.24 wind 3.0 10 < th dose dependent rect. 19 8
637 83.26 temperature 25.0 270 < th dose independent rect. 20 11
644 83.29 temperature 10.0 10 > th dose independent rect. 2 12
646 83.29 temperature 10.0 10 > th dose independent rect. 14 12
648 83.29 atmosphere 1015.0 10 < th dose independent rect. 2 12
654 83.33 wind 3.0 10 < th dose dependent rect. 16 11
657 83.34 precipitation 0.1 10 < th dose independent rect. 2 12
660 83.34 precipitation 0.1 10 < th dose dependent rect. 2 12
662 83.35 humidity 50.0 720 > th dose independent rect. 14 1
668 83.36 temperature 10.0 720 > th dose dependent rect. 14 1
672 83.36 radiation 40.0 10 < th dose dependent rect. 14 12
674 83.37 wind 9.0 720 < th dose independent rect. 15 6
677 83.37 wind 1.0 10 > th dose independent rect. 21 22
707 83.41 wind 9.0 10 < th dose independent rect. 14 12
713 83.42 precipitation 0.1 10 < th dose independent rect. 14 12
717 83.42 precipitation 0.1 10 < th dose dependent rect. 14 12
725 83.44 humidity 90.0 90 < th dose independent rect. 1 4
731 83.45 precipitation 0.1 720 < th dose independent rect. 14 1
740 83.45 precipitation 0.1 720 < th dose dependent rect. 14 1
745 83.47 atmosphere 995.0 720 > th dose independent rect. 14 1
746 83.47 humidity 50.0 10 > th dose independent rect. 14 12
758 83.50 humidity 90.0 10 > th dose independent rect. 24 3
762 83.51 temperature 10.0 720 > th dose independent rect. 14 1
763 83.51 atmosphere 1015.0 720 < th dose independent rect. 14 1
766 83.51 temperature 10.0 720 > th dose independent rect. 15 23
767 83.51 atmosphere 995.0 720 > th dose independent rect. 15 23
770 83.52 atmosphere 1005.0 90 > th dose independent rect. 19 1
773 83.52 wind 9.0 720 < th dose independent rect. 17 10
792 83.53 atmosphere 995.0 720 > th dose independent rect. 3 23
804 83.54 temperature 10.0 1440 > th dose independent rect. 3 12
807 83.54 temperature 10.0 1440 > th dose independent rect. 15 12
844 83.58 temperature 10.0 30 > th dose dependent rect. 14 12
845 83.59 precipitation 0.1 720 < th dose independent rect. 2 1
846 83.59 humidity 50.0 10 > th dose independent rect. 2 12
847 83.59 precipitation 0.1 720 < th dose dependent rect. 2 1
860 83.62 temperature 30.0 10 < th dose independent rect. 2 12
862 83.62 humidity 90.0 10 > th dose independent rect. 11 16
875 83.65 wind 9.0 10 < th dose independent rect. 2 12
889 83.68 humidity 90.0 10 > th dose independent rect. 8 19
913 83.73 wind 1.0 720 > th dose independent rect. 14 1
915 83.73 humidity 90.0 10 > th dose independent rect. 2 19
924 83.74 wind 3.0 10 < th dose independent rect. 16 5
925 83.74 temperature 25.0 720 < th dose independent rect. 20 5
969 83.78 temperature 30.0 10 < th dose independent rect. 14 12
970 83.78 humidity 90.0 10 > th dose independent rect. 13 14
979 83.81 temperature 20.0 720 > th dose independent rect. 14 1
993 83.83 wind 9.0 720 < th dose independent rect. 14 1