Os12g0559400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Pib.
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Os12g0559400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Pib.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 252.29 | 0.746 | 2.81 | 0.321 | 0.138 | -0.185 | 0.2 | 7.8 | 0.0144 | 20 | 0.0988 | 123 | -- | -- |
| 272.33 | 0.769 | 2.86 | 0.0972 | 0.184 | 0.989 | -0.0179 | -- | 0.0459 | 19.2 | 0.6 | 197 | -- | -- |
| 252.4 | 0.74 | 2.81 | 0.317 | 0.135 | -0.201 | -- | 7.75 | 0.0127 | 20.2 | 0.1 | 122 | -- | -- |
| 272.29 | 0.769 | 2.86 | 0.099 | 0.18 | 0.956 | -- | -- | 0.0404 | 19.8 | 0.6 | 197 | -- | -- |
| 253.24 | 0.741 | 2.81 | 0.344 | -- | -0.38 | -- | 8.19 | 0.00574 | -- | 0.06678 | 118 | -- | -- |
| 278.77 | 0.783 | 2.87 | 0.211 | 0.0865 | -- | 0.598 | -- | -0.0205 | 2.87 | -- | -- | -- | -- |
| 279.73 | 0.783 | 2.88 | 0.198 | 0.107 | -- | -- | -- | -0.0234 | 0.228 | -- | -- | -- | -- |
| 273.87 | 0.771 | 2.86 | 0.109 | -- | 0.821 | -- | -- | 0.0232 | -- | 0.6 | 195 | -- | -- |
| 272.51 | 0.769 | 2.87 | -- | 0.178 | 0.98 | -- | -- | 0.0253 | 19.7 | 0.5999 | 197 | -- | -- |
| 280.44 | 0.783 | 2.87 | 0.201 | -- | -- | -- | -- | -0.0218 | -- | -- | -- | -- | -- |
| 280.76 | 0.784 | 2.88 | -- | 0.109 | -- | -- | -- | -0.0455 | 0.326 | -- | -- | -- | -- |
| 274.18 | 0.771 | 2.87 | -- | -- | 0.852 | -- | -- | 0.0134 | -- | 0.6 | 195 | -- | -- |
| 281.51 | 0.783 | 2.88 | -- | -- | -- | -- | -- | -0.0441 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 245.03 | temperature | 20 | 90 | < th | dose independent | rect. | 5 | 6 |
| 2 | 245.03 | temperature | 20 | 90 | < th | dose independent | rect. | 5 | 13 |
| 71 | 247.27 | temperature | 20 | 90 | < th | dose independent | rect. | 4 | 19 |
| 72 | 247.51 | temperature | 20 | 90 | < th | dose dependent | sin | 23 | NA |
| 74 | 247.81 | temperature | 20 | 90 | < th | dose dependent | rect. | 5 | 16 |
| 76 | 248.29 | temperature | 20 | 90 | < th | dose dependent | rect. | 4 | 19 |
| 78 | 249.29 | temperature | 25 | 10 | < th | dose dependent | rect. | 5 | 8 |
| 82 | 249.50 | temperature | 20 | 90 | < th | dose dependent | rect. | 5 | 5 |
| 84 | 249.58 | temperature | 25 | 10 | < th | dose dependent | rect. | 5 | 4 |
| 100 | 249.90 | temperature | 20 | 90 | < th | dose independent | sin | 0 | NA |
| 109 | 250.58 | temperature | 20 | 90 | > th | dose independent | sin | 0 | NA |
| 175 | 253.48 | temperature | 25 | 10 | < th | dose dependent | rect. | 5 | 18 |
| 186 | 253.71 | temperature | 20 | 270 | < th | dose independent | rect. | 2 | 19 |
| 189 | 253.78 | temperature | 20 | 270 | < th | dose independent | rect. | 2 | 21 |
| 227 | 254.98 | temperature | 20 | 270 | < th | dose independent | rect. | 2 | 6 |
| 238 | 255.32 | temperature | 20 | 270 | < th | dose independent | rect. | 2 | 4 |
| 242 | 255.37 | temperature | 20 | 270 | < th | dose independent | rect. | 2 | 14 |
| 247 | 255.40 | temperature | 20 | 270 | < th | dose independent | rect. | 2 | 9 |
| 330 | 256.80 | temperature | 20 | 270 | > th | dose independent | rect. | 23 | 11 |
| 433 | 258.44 | wind | 1 | 270 | < th | dose dependent | rect. | 20 | 9 |
| 440 | 258.55 | wind | 1 | 270 | < th | dose dependent | rect. | 16 | 13 |
| 450 | 258.73 | temperature | 20 | 270 | > th | dose independent | rect. | 22 | 23 |
| 465 | 259.05 | temperature | 20 | 270 | > th | dose independent | rect. | 2 | 15 |
| 512 | 259.83 | wind | 1 | 90 | < th | dose dependent | rect. | 4 | 1 |
| 535 | 260.12 | temperature | 20 | 270 | > th | dose independent | rect. | 20 | 23 |
| 541 | 260.18 | temperature | 20 | 270 | > th | dose independent | rect. | 22 | 20 |
| 577 | 260.42 | temperature | 20 | 270 | > th | dose independent | rect. | 12 | 23 |
| 613 | 260.65 | wind | 1 | 90 | < th | dose dependent | rect. | 4 | 23 |
| 639 | 260.92 | temperature | 20 | 270 | < th | dose independent | rect. | 9 | 23 |
| 642 | 260.95 | temperature | 20 | 270 | < th | dose independent | rect. | 20 | 23 |
| 658 | 261.09 | temperature | 20 | 270 | < th | dose independent | rect. | 20 | 12 |
| 659 | 261.09 | temperature | 20 | 270 | < th | dose independent | rect. | 13 | 19 |
| 684 | 261.14 | temperature | 20 | 270 | < th | dose independent | no | NA | NA |
| 687 | 261.14 | temperature | 20 | 270 | < th | dose independent | rect. | 13 | 23 |
| 689 | 261.15 | temperature | 20 | 270 | < th | dose independent | rect. | 20 | 16 |
| 738 | 261.21 | temperature | 20 | 270 | < th | dose independent | rect. | 7 | 23 |
| 752 | 261.26 | wind | 3 | 90 | > th | dose dependent | rect. | 4 | 1 |
| 786 | 261.34 | wind | 1 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 806 | 261.44 | wind | 1 | 270 | < th | dose dependent | rect. | 9 | 20 |
| 813 | 261.50 | wind | 3 | 90 | > th | dose independent | rect. | 4 | 3 |
| 814 | 261.51 | temperature | 20 | 270 | > th | dose independent | no | NA | NA |
| 835 | 261.58 | wind | 1 | 270 | < th | dose dependent | sin | 14 | NA |
| 842 | 261.61 | wind | 1 | 90 | < th | dose dependent | sin | 10 | NA |
| 866 | 261.76 | wind | 3 | 90 | > th | dose dependent | rect. | 4 | 3 |
| 936 | 262.13 | wind | 1 | 720 | < th | dose dependent | rect. | 20 | 3 |
| 991 | 262.42 | atmosphere | 1005 | 10 | > th | dose dependent | rect. | 5 | 3 |