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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0559200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Lipoxygenase (EC 1.13.11.12).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.7 (0.0615) R2 : 0.472
β1 : -2.87 (0.288) R2dD : 0.247 R2D : -0.0543
β2 : 1.77 (0.134) R2dC : 0.218 R2C : 0.246
β3 : -1.03 (0.288) R2dE : 0.0255 R2E : 0.0819
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 7.28 (1.1) R2dD*E : 0.156 R2D*E : -0.00943
γ1 : 0.174 (0.129) R2dN8 : 0.00354 R2N8 : 0.0141
σ : 1.02
deviance : 482.86
__
_____
C
peak time of C : 0.481
E
wheather : radiation
threshold : 0.33
memory length : 15268
response mode : < th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 4.2
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
485.29 1.04 11.7 -2.78 2.02 -0.985 -1.82 6.83 0.231 0.31 0.05989 14852 4.11 --
531.88 1.07 11.5 -1.57 2.2 -1.54 -1.64 -- 0.36 0.071 0.0006703 17461 4.03 --
482.86 1.02 11.7 -2.87 1.77 -1.03 -- 7.28 0.174 0.481 0.33 15268 4.2 --
520.09 1.06 11.5 -1.75 1.85 -1.86 -- -- 0.295 23.9 0.009958 14366 4.71 --
645.8 1.19 11.4 -0.875 -- 1.5 -- -0.896 0.796 -- 0.6062 11080 4.24 --
592.2 1.14 11.4 -1 1.92 -- -1.2 -- 0.751 23.8 -- -- -- --
598.3 1.15 11.4 -0.953 1.92 -- -- -- 0.755 23.9 -- -- -- --
595.46 1.14 11.4 -0.951 -- 1.89 -- -- 0.762 -- 62.55 21867 5.93 --
584.48 1.13 11.5 -- 1.67 -1.51 -- -- 0.581 0.492 0.0839 14019 6.31 --
831.03 1.35 11.4 -0.895 -- -- -- -- 0.781 -- -- -- -- --
622.24 1.17 11.4 -- 1.91 -- -- -- 0.861 23.9 -- -- -- --
619.32 1.16 11.4 -- -- 1.87 -- -- 0.868 -- 62.55 21867 5.93 --
852.16 1.36 11.4 -- -- -- -- -- 0.88 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 470.88 wind 1 43200 > th dose independent rect. 2 1
2 475.90 wind 1 43200 < th dose independent rect. 2 1
3 481.47 radiation 1 4320 < th dose dependent rect. 1 4
4 482.98 radiation 1 4320 < th dose dependent rect. 3 2
5 483.12 wind 1 43200 < th dose dependent rect. 2 1
9 483.83 radiation 40 43200 < th dose independent rect. 16 16
10 484.12 humidity 90 14400 > th dose independent rect. 21 9
12 484.30 radiation 40 43200 < th dose independent rect. 7 1
16 484.61 radiation 40 43200 < th dose independent rect. 1 7
19 484.73 humidity 90 14400 > th dose independent rect. 22 6
21 484.90 radiation 40 43200 < th dose independent rect. 3 5
22 484.91 radiation 40 43200 < th dose independent rect. 22 10
31 485.44 atmosphere 1015 43200 > th dose independent rect. 19 1
40 486.04 humidity 90 14400 > th dose independent rect. 23 3
45 486.99 radiation 40 43200 < th dose independent rect. 15 5
47 487.06 radiation 20 43200 < th dose independent rect. 17 3
52 487.26 radiation 40 43200 < th dose independent rect. 15 13
57 487.33 radiation 40 43200 < th dose independent rect. 15 11
58 487.35 atmosphere 1015 43200 > th dose dependent rect. 19 1
71 487.75 atmosphere 1015 43200 < th dose independent rect. 15 1
74 487.89 atmosphere 1015 43200 < th dose independent rect. 18 1
75 487.90 radiation 20 43200 < th dose independent rect. 17 11
76 487.91 atmosphere 1015 43200 > th dose independent rect. 15 1
90 488.01 atmosphere 1015 43200 < th dose independent rect. 15 4
97 488.17 atmosphere 1015 43200 > th dose dependent rect. 15 1
100 488.19 radiation 20 43200 < th dose independent rect. 17 9
120 488.46 radiation 1 4320 < th dose dependent rect. 19 10
136 489.84 radiation 30 14400 > th dose independent rect. 7 1
163 490.28 atmosphere 1015 43200 < th dose independent rect. 13 1
164 490.29 atmosphere 1015 43200 > th dose independent rect. 12 1
176 490.43 radiation 1 43200 < th dose independent rect. 1 4
181 490.49 humidity 90 14400 < th dose independent rect. 23 2
184 490.63 radiation 1 43200 > th dose independent rect. 4 1
194 490.63 radiation 1 43200 > th dose dependent rect. 4 1
217 491.05 radiation 1 43200 < th dose independent rect. 3 2
223 491.19 radiation 1 43200 < th dose independent rect. 22 7
228 491.25 humidity 90 14400 > th dose dependent rect. 24 1
280 492.30 radiation 1 14400 < th dose dependent rect. 18 14
285 492.45 humidity 90 14400 > th dose dependent rect. 23 3
286 492.52 humidity 90 14400 < th dose independent rect. 21 7
287 492.57 radiation 30 43200 > th dose dependent rect. 7 1
311 492.94 radiation 40 43200 > th dose dependent rect. 15 17
351 493.69 radiation 40 4320 < th dose independent rect. 4 5
353 493.74 radiation 40 4320 < th dose independent rect. 17 16
364 493.89 radiation 40 4320 < th dose independent rect. 20 13
374 494.03 radiation 1 14400 < th dose dependent rect. 18 21
381 494.14 wind 9 1440 > th dose dependent rect. 12 4
382 494.14 humidity 90 14400 > th dose dependent rect. 23 9
384 494.21 temperature 15 43200 > th dose independent rect. 13 1
387 494.26 temperature 15 43200 < th dose independent rect. 13 1
392 494.34 humidity 90 14400 > th dose independent rect. 5 1
399 494.43 radiation 1 43200 < th dose dependent rect. 6 1
401 494.44 wind 7 1440 > th dose dependent rect. 12 1
442 494.95 humidity 90 14400 > th dose independent sin 11 NA
443 494.97 radiation 1 14400 < th dose dependent sin 11 NA
444 494.97 humidity 90 14400 > th dose dependent rect. 3 5
446 495.00 radiation 1 43200 < th dose dependent rect. 6 3
475 495.33 wind 9 1440 > th dose independent rect. 12 4
477 495.35 humidity 90 14400 > th dose dependent rect. 5 1
480 495.38 humidity 90 43200 > th dose independent rect. 10 1
528 496.18 radiation 1 43200 < th dose dependent rect. 6 8
556 496.68 wind 9 1440 < th dose independent rect. 12 4
583 496.88 wind 9 1440 > th dose independent rect. 13 1
590 496.92 atmosphere 1005 43200 < th dose dependent rect. 2 1
604 497.09 radiation 1 14400 < th dose dependent rect. 17 9
607 497.10 radiation 1 14400 < th dose dependent rect. 17 3
609 497.10 radiation 1 14400 < th dose dependent rect. 12 20
623 497.22 wind 9 1440 < th dose independent rect. 13 1
624 497.22 radiation 1 43200 < th dose independent rect. 7 4
631 497.27 radiation 1 43200 > th dose independent rect. 7 4
639 497.34 humidity 90 43200 < th dose independent rect. 5 7
646 497.42 radiation 1 43200 < th dose independent rect. 7 2
655 497.48 radiation 1 43200 > th dose independent rect. 7 2
665 497.57 radiation 1 14400 < th dose dependent rect. 4 11
710 497.68 radiation 1 43200 < th dose independent rect. 7 7
725 497.69 humidity 90 43200 < th dose independent rect. 5 5
731 497.70 humidity 90 14400 > th dose dependent rect. 4 3
734 497.74 radiation 1 43200 > th dose independent rect. 7 7
743 497.78 humidity 90 43200 > th dose dependent rect. 10 1
766 497.89 radiation 30 4320 > th dose dependent rect. 16 17
782 497.98 temperature 20 43200 > th dose independent rect. 7 1
783 497.98 humidity 90 43200 > th dose independent rect. 9 3
802 498.04 radiation 1 14400 > th dose independent rect. 18 1
843 498.31 humidity 90 43200 < th dose independent rect. 10 1
870 498.41 radiation 1 14400 < th dose independent rect. 10 1
871 498.41 radiation 1 14400 < th dose dependent rect. 10 1
883 498.46 radiation 1 14400 < th dose dependent rect. 4 15
917 498.48 radiation 1 14400 < th dose dependent no NA NA
936 498.54 temperature 20 43200 < th dose independent rect. 7 1
937 498.55 humidity 80 43200 > th dose dependent rect. 5 6
945 498.65 radiation 1 14400 > th dose independent rect. 10 1
964 498.86 humidity 90 14400 > th dose dependent sin 9 NA
990 499.01 atmosphere 1015 43200 > th dose dependent rect. 24 2