Os12g0556300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Calmodulin binding protein-like family protein.
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Os12g0556300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Calmodulin binding protein-like family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 191.2 | 0.65 | 6.48 | -1.91 | 2.27 | -2.7 | -0.562 | 5.25 | -0.616 | 0.201 | 11.36 | 822 | 5 | 17.6 |
| 204.61 | 0.666 | 6.44 | -1.68 | 2.37 | -2.63 | 1.55 | -- | -0.533 | 0.501 | 6.754 | 825 | 4.92 | 17.7 |
| 188.29 | 0.639 | 6.48 | -1.8 | 2.32 | -2.85 | -- | 4.59 | -0.583 | 0.613 | 8.792 | 828 | 4.88 | 17.9 |
| 214.41 | 0.682 | 6.44 | -1.72 | 2.33 | -2.74 | -- | -- | -0.579 | 0.778 | 7.039 | 831 | 4.71 | 18.2 |
| 280.42 | 0.78 | 6.52 | -2.64 | -- | -3.88 | -- | 3.19 | -0.999 | -- | 4.635 | 1246 | 4.2 | 22.4 |
| 269.67 | 0.77 | 6.43 | -1.56 | 1.5 | -- | 1.32 | -- | -0.4 | 22.3 | -- | -- | -- | -- |
| 276.5 | 0.779 | 6.43 | -1.61 | 1.5 | -- | -- | -- | -0.402 | 22.1 | -- | -- | -- | -- |
| 234.52 | 0.713 | 6.47 | -1.69 | -- | -2.6 | -- | -- | -0.728 | -- | 6.749 | 1202 | 4.99 | 24 |
| 290.88 | 0.794 | 6.45 | -- | 2.27 | -2.78 | -- | -- | -0.416 | 0.724 | 9.967 | 807 | 4.67 | 18.6 |
| 412.08 | 0.949 | 6.39 | -1.59 | -- | -- | -- | -- | -0.4 | -- | -- | -- | -- | -- |
| 345.24 | 0.869 | 6.39 | -- | 1.49 | -- | -- | -- | -0.222 | 22.1 | -- | -- | -- | -- |
| 308.53 | 0.818 | 6.44 | -- | -- | -2.76 | -- | -- | -0.569 | -- | 10 | 1180 | 5.48 | 24 |
| 479.13 | 1.02 | 6.35 | -- | -- | -- | -- | -- | -0.223 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 200.73 | radiation | 10 | 720 | < th | dose dependent | rect. | 5 | 19 |
| 10 | 208.47 | radiation | 10 | 1440 | < th | dose dependent | rect. | 8 | 10 |
| 13 | 208.80 | radiation | 10 | 1440 | < th | dose dependent | rect. | 8 | 18 |
| 14 | 208.83 | radiation | 10 | 1440 | < th | dose dependent | rect. | 8 | 16 |
| 16 | 208.83 | radiation | 10 | 1440 | < th | dose dependent | rect. | 8 | 20 |
| 17 | 208.84 | radiation | 10 | 1440 | < th | dose dependent | rect. | 8 | 12 |
| 23 | 208.96 | radiation | 20 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 42 | 210.79 | radiation | 10 | 1440 | < th | dose dependent | sin | 23 | NA |
| 47 | 211.44 | radiation | 20 | 270 | < th | dose dependent | rect. | 4 | 11 |
| 48 | 211.65 | radiation | 30 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 54 | 211.96 | radiation | 10 | 720 | < th | dose dependent | sin | 3 | NA |
| 85 | 212.86 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 1 |
| 89 | 213.10 | radiation | 30 | 1440 | < th | dose dependent | rect. | 10 | 3 |
| 98 | 213.24 | radiation | 20 | 1440 | > th | dose independent | rect. | 10 | 3 |
| 150 | 214.40 | temperature | 20 | 1440 | > th | dose dependent | rect. | 5 | 3 |
| 170 | 214.75 | radiation | 20 | 1440 | < th | dose dependent | rect. | 8 | 6 |
| 185 | 215.03 | radiation | 10 | 720 | < th | dose dependent | rect. | 2 | 15 |
| 188 | 215.08 | radiation | 10 | 1440 | < th | dose dependent | rect. | 22 | 20 |
| 192 | 215.11 | radiation | 10 | 1440 | < th | dose dependent | rect. | 19 | 23 |
| 197 | 215.13 | radiation | 10 | 1440 | < th | dose dependent | rect. | 1 | 17 |
| 251 | 215.40 | radiation | 1 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 258 | 215.41 | radiation | 10 | 1440 | < th | dose dependent | rect. | 1 | 23 |
| 260 | 215.42 | radiation | 10 | 1440 | < th | dose dependent | no | NA | NA |
| 308 | 215.47 | radiation | 20 | 1440 | < th | dose dependent | rect. | 15 | 23 |
| 382 | 215.69 | radiation | 10 | 1440 | < th | dose dependent | rect. | 12 | 23 |
| 397 | 215.95 | radiation | 10 | 1440 | > th | dose independent | rect. | 8 | 6 |
| 418 | 216.17 | radiation | 10 | 720 | < th | dose independent | rect. | 5 | 19 |
| 428 | 216.35 | radiation | 10 | 1440 | > th | dose independent | rect. | 16 | 22 |
| 432 | 216.40 | temperature | 20 | 1440 | > th | dose dependent | rect. | 3 | 6 |
| 464 | 216.78 | radiation | 10 | 1440 | > th | dose independent | rect. | 8 | 9 |
| 466 | 216.79 | temperature | 20 | 4320 | > th | dose dependent | rect. | 20 | 4 |
| 473 | 216.84 | temperature | 20 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 504 | 217.03 | radiation | 20 | 1440 | < th | dose independent | rect. | 10 | 3 |
| 529 | 217.25 | radiation | 10 | 1440 | > th | dose independent | rect. | 6 | 8 |
| 581 | 217.42 | radiation | 10 | 1440 | > th | dose independent | sin | 1 | NA |
| 622 | 217.58 | radiation | 20 | 1440 | < th | dose independent | rect. | 10 | 16 |
| 624 | 217.59 | radiation | 20 | 1440 | < th | dose independent | rect. | 10 | 14 |
| 629 | 217.60 | radiation | 20 | 1440 | < th | dose independent | rect. | 10 | 10 |
| 645 | 217.61 | radiation | 20 | 1440 | < th | dose independent | rect. | 10 | 8 |
| 681 | 217.65 | radiation | 20 | 1440 | < th | dose independent | rect. | 10 | 20 |
| 757 | 217.98 | temperature | 20 | 1440 | > th | dose dependent | rect. | 19 | 14 |
| 763 | 218.04 | radiation | 10 | 270 | < th | dose independent | rect. | 4 | 11 |
| 766 | 218.06 | radiation | 10 | 1440 | > th | dose independent | rect. | 8 | 23 |
| 858 | 218.39 | radiation | 30 | 1440 | < th | dose independent | rect. | 11 | 1 |