Os12g0556200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Calmodulin binding protein-like family protein.
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Os12g0556200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Calmodulin binding protein-like family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 394.21 | 0.933 | 9.02 | 1.2 | 1.45 | -1.79 | 1.32 | 2.05 | 0.809 | 21.7 | 72 | 936 | 6.93 | -- |
| 399.14 | 0.93 | 9.03 | 1.02 | 1.43 | -1.65 | 1.84 | -- | 0.798 | 21.8 | 72 | 948 | 7.37 | -- |
| 398.83 | 0.93 | 9.01 | 1.25 | 1.53 | -1.83 | -- | 2.91 | 0.831 | 21.7 | 72 | 938 | 7.52 | -- |
| 412.07 | 0.945 | 9.03 | 0.921 | 1.42 | -1.62 | -- | -- | 0.79 | 21.6 | 72.27 | 947 | 7.44 | -- |
| 490.36 | 1.03 | 8.95 | 1.26 | -- | -1.39 | -- | 2.21 | 0.955 | -- | 71.35 | 1176 | 8.24 | -- |
| 486.42 | 1.03 | 9.02 | 0.829 | 1.15 | -- | 1.56 | -- | 0.804 | 20.1 | -- | -- | -- | -- |
| 492.77 | 1.04 | 9.02 | 0.79 | 1.17 | -- | -- | -- | 0.808 | 19.7 | -- | -- | -- | -- |
| 491.87 | 1.03 | 8.99 | 0.804 | -- | -1.18 | -- | -- | 0.81 | -- | 96 | 1136 | 7.78 | -- |
| 434.28 | 0.971 | 9.05 | -- | 1.42 | -1.56 | -- | -- | 0.713 | 21.6 | 72 | 948 | 7.63 | -- |
| 566.32 | 1.11 | 8.99 | 0.774 | -- | -- | -- | -- | 0.791 | -- | -- | -- | -- | -- |
| 509.22 | 1.06 | 9.04 | -- | 1.16 | -- | -- | -- | 0.72 | 19.7 | -- | -- | -- | -- |
| 508.68 | 1.05 | 9.01 | -- | -- | -1.16 | -- | -- | 0.72 | -- | 96.82 | 1176 | 8.07 | -- |
| 582.14 | 1.13 | 9.01 | -- | -- | -- | -- | -- | 0.705 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 394.50 | humidity | 50 | 720 | > th | dose dependent | rect. | 16 | 5 |
| 2 | 396.47 | humidity | 70 | 720 | > th | dose independent | rect. | 17 | 3 |
| 12 | 399.31 | humidity | 70 | 720 | > th | dose independent | rect. | 17 | 10 |
| 16 | 401.27 | radiation | 10 | 720 | < th | dose dependent | rect. | 16 | 11 |
| 25 | 402.72 | temperature | 30 | 720 | < th | dose independent | rect. | 17 | 10 |
| 30 | 404.74 | temperature | 30 | 720 | < th | dose independent | rect. | 16 | 4 |
| 39 | 406.55 | temperature | 30 | 720 | < th | dose independent | rect. | 17 | 2 |
| 64 | 410.11 | humidity | 90 | 720 | < th | dose dependent | rect. | 12 | 12 |
| 70 | 410.36 | radiation | 10 | 720 | < th | dose dependent | rect. | 16 | 3 |
| 81 | 411.52 | humidity | 90 | 720 | < th | dose dependent | rect. | 17 | 6 |
| 99 | 412.49 | radiation | 1 | 720 | < th | dose independent | rect. | 17 | 10 |
| 109 | 413.47 | radiation | 1 | 720 | < th | dose dependent | rect. | 12 | 15 |
| 139 | 414.90 | humidity | 90 | 720 | < th | dose dependent | sin | 16 | NA |
| 164 | 416.14 | humidity | 50 | 720 | > th | dose dependent | rect. | 16 | 10 |
| 174 | 416.54 | radiation | 1 | 720 | < th | dose independent | rect. | 13 | 14 |
| 252 | 418.66 | radiation | 10 | 720 | < th | dose independent | rect. | 16 | 1 |
| 260 | 418.91 | humidity | 70 | 720 | < th | dose independent | sin | 13 | NA |
| 286 | 419.31 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 4 |
| 287 | 419.34 | radiation | 30 | 1440 | < th | dose dependent | rect. | 12 | 1 |
| 291 | 419.41 | radiation | 1 | 720 | < th | dose dependent | rect. | 12 | 7 |
| 324 | 420.03 | humidity | 70 | 720 | < th | dose independent | rect. | 16 | 16 |
| 330 | 420.12 | humidity | 70 | 720 | < th | dose independent | rect. | 16 | 4 |
| 374 | 420.84 | radiation | 1 | 720 | < th | dose independent | rect. | 14 | 5 |
| 412 | 421.75 | humidity | 70 | 720 | > th | dose independent | sin | 13 | NA |
| 430 | 422.03 | radiation | 1 | 720 | > th | dose independent | rect. | 12 | 17 |
| 432 | 422.06 | temperature | 30 | 720 | < th | dose independent | sin | 13 | NA |
| 439 | 422.18 | radiation | 20 | 1440 | > th | dose independent | rect. | 12 | 1 |
| 440 | 422.18 | radiation | 1 | 720 | > th | dose independent | rect. | 12 | 7 |
| 468 | 422.43 | radiation | 1 | 720 | > th | dose independent | rect. | 18 | 11 |
| 471 | 422.52 | radiation | 20 | 1440 | < th | dose independent | rect. | 12 | 1 |
| 495 | 422.71 | radiation | 1 | 720 | > th | dose independent | rect. | 18 | 1 |
| 526 | 423.12 | humidity | 70 | 720 | < th | dose independent | rect. | 14 | 6 |
| 551 | 423.37 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 13 |
| 554 | 423.39 | humidity | 80 | 720 | < th | dose independent | rect. | 12 | 9 |
| 560 | 423.42 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 17 |
| 561 | 423.43 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 6 |
| 570 | 423.50 | humidity | 50 | 720 | > th | dose dependent | sin | 17 | NA |
| 632 | 424.24 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 4 |
| 724 | 425.52 | wind | 9 | 43200 | < th | dose independent | rect. | 17 | 3 |
| 741 | 425.68 | radiation | 20 | 1440 | < th | dose dependent | rect. | 14 | 1 |
| 825 | 426.50 | radiation | 10 | 1440 | < th | dose dependent | sin | 19 | NA |
| 839 | 426.67 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 20 |
| 897 | 426.99 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 5 |