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Os12g0554300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, unclassifiable transcript.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.4 (0.0223) R2 : 0.648
β1 : 1.8 (0.0817) R2dD : 0.39 R2D : 0.334
β2 : 1.04 (0.0581) R2dC : 0.248 R2C : 0.252
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.346 (0.0476) R2dN8 : 0.0547 R2N8 : -0.00197
σ : 0.419
deviance : 80.17
__
_____
C
peak time of C : 5.34
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
73.11 0.402 9.52 0.86 1.12 0.586 -0.531 -5.1 0.121 5.57 25.5 871 -- --
79.77 0.416 9.41 1.77 1.07 0.106 -0.313 -- 0.321 5.23 21.39 70 -- --
73.41 0.399 9.53 0.773 1.09 0.625 -- -5.13 0.115 5.59 25.95 984 -- --
79.78 0.416 9.41 1.76 1.04 0.118 -- -- 0.318 5.43 20.67 1036 -- --
123.31 0.52 9.4 1.95 -- -0.732 -- 0.122 0.446 -- 24.41 1219 -- --
79.97 0.419 9.4 1.8 1.04 -- -0.286 -- 0.345 5.3 -- -- -- --
80.17 0.419 9.4 1.8 1.04 -- -- -- 0.346 5.34 -- -- -- --
123.31 0.519 9.4 1.94 -- -0.723 -- -- 0.441 -- 24.41 1219 -- --
98.91 0.463 9.54 -- 1.03 1.31 -- -- -0.247 5.42 8.701 47520 -- --
136.37 0.546 9.42 1.84 -- -- -- -- 0.372 -- -- -- -- --
165.66 0.602 9.45 -- 1.07 -- -- -- 0.145 5.27 -- -- -- --
154.16 0.578 9.55 -- -- 1.35 -- -- -0.24 -- 10.5 47353 -- --
225.33 0.701 9.46 -- -- -- -- -- 0.168 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 67.14 temperature 15.0 270 > th dose dependent rect. 5 3
5 67.45 temperature 20.0 270 > th dose independent rect. 5 3
6 67.60 humidity 70.0 270 > th dose dependent rect. 5 2
7 67.64 humidity 80.0 270 > th dose independent rect. 5 2
11 67.74 atmosphere 995.0 270 > th dose independent rect. 8 21
23 68.09 atmosphere 1000.0 270 > th dose independent rect. 9 19
31 68.30 radiation 30.0 270 < th dose independent rect. 5 3
36 68.48 precipitation 0.1 270 < th dose independent rect. 8 21
37 68.48 precipitation 0.1 270 < th dose dependent rect. 8 21
42 68.71 atmosphere 1000.0 90 > th dose independent rect. 11 18
49 68.78 wind 9.0 270 < th dose independent rect. 5 3
50 68.78 temperature 10.0 270 > th dose independent rect. 5 3
52 68.78 temperature 30.0 270 < th dose independent rect. 5 3
53 68.78 humidity 50.0 270 > th dose independent rect. 5 3
55 68.78 atmosphere 995.0 270 > th dose independent rect. 5 3
56 68.78 atmosphere 1015.0 270 < th dose independent rect. 5 3
57 68.78 temperature 10.0 270 > th dose independent rect. 8 21
62 68.83 precipitation 0.1 270 < th dose independent rect. 5 3
64 68.83 precipitation 0.1 270 < th dose dependent rect. 5 3
85 69.03 atmosphere 1000.0 10 > th dose independent rect. 11 19
92 69.17 radiation 20.0 90 < th dose dependent sin 10 NA
95 69.20 precipitation 0.1 270 < th dose independent rect. 9 19
97 69.20 precipitation 0.1 270 < th dose dependent rect. 9 19
101 69.21 radiation 40.0 270 < th dose dependent rect. 5 2
105 69.24 temperature 15.0 10 > th dose dependent rect. 6 5
106 69.25 wind 9.0 270 < th dose independent rect. 8 21
107 69.25 wind 9.0 270 < th dose dependent rect. 5 3
111 69.32 atmosphere 995.0 90 > th dose dependent rect. 11 18
112 69.33 wind 5.0 90 < th dose independent rect. 11 18
119 69.36 wind 1.0 90 > th dose independent rect. 6 3
121 69.37 wind 9.0 270 < th dose dependent rect. 9 19
124 69.40 wind 9.0 270 < th dose independent rect. 4 5
125 69.40 temperature 10.0 270 > th dose independent rect. 4 5
128 69.40 atmosphere 995.0 270 > th dose independent rect. 4 5
129 69.40 atmosphere 1015.0 270 < th dose independent rect. 4 5
130 69.40 temperature 10.0 270 > th dose independent rect. 9 19
143 69.42 wind 9.0 90 < th dose dependent rect. 11 18
164 69.52 atmosphere 1005.0 10 > th dose independent rect. 20 10
179 69.56 temperature 25.0 90 > th dose dependent rect. 1 8
183 69.61 wind 9.0 270 < th dose dependent rect. 8 21
184 69.62 atmosphere 995.0 10 > th dose dependent rect. 11 19
189 69.64 temperature 25.0 90 > th dose dependent rect. 3 6
205 69.74 wind 1.0 270 > th dose independent rect. 4 4
210 69.78 wind 9.0 270 < th dose independent rect. 9 19
216 69.82 wind 5.0 270 < th dose independent rect. 17 11
233 69.90 temperature 10.0 1440 > th dose independent rect. 6 6
236 69.90 atmosphere 995.0 1440 > th dose independent rect. 6 6
238 69.90 temperature 10.0 1440 > th dose independent rect. 12 18
241 69.90 wind 5.0 270 < th dose independent rect. 9 19
252 69.93 radiation 40.0 10 < th dose independent rect. 6 5
254 69.94 temperature 20.0 10 > th dose independent rect. 6 5
264 70.01 wind 9.0 270 < th dose dependent rect. 17 11
265 70.01 radiation 1.0 90 > th dose dependent rect. 17 16
279 70.05 humidity 70.0 10 > th dose dependent rect. 8 1
280 70.05 atmosphere 995.0 90 > th dose dependent rect. 6 3
284 70.06 precipitation 0.1 90 < th dose independent rect. 11 18
287 70.06 precipitation 0.1 90 < th dose dependent rect. 11 18
306 70.12 atmosphere 995.0 270 > th dose dependent rect. 9 19
310 70.15 wind 7.0 10 < th dose independent rect. 6 5
316 70.16 precipitation 0.1 10 < th dose independent rect. 11 19
318 70.16 precipitation 0.1 10 < th dose dependent rect. 11 19
333 70.19 atmosphere 1005.0 90 > th dose independent rect. 17 12
334 70.19 temperature 10.0 90 > th dose independent rect. 11 18
336 70.19 atmosphere 1015.0 10 < th dose dependent rect. 8 1
355 70.24 precipitation 0.1 270 < th dose independent rect. 24 13
356 70.24 atmosphere 1000.0 10 > th dose independent rect. 9 23
359 70.24 precipitation 0.1 270 < th dose dependent rect. 24 13
363 70.26 temperature 10.0 10 > th dose independent rect. 6 5
365 70.26 humidity 50.0 10 > th dose independent rect. 6 5
366 70.26 atmosphere 995.0 10 > th dose independent rect. 6 5
367 70.26 atmosphere 1015.0 10 < th dose independent rect. 6 5
371 70.26 temperature 10.0 10 > th dose independent rect. 11 19
377 70.28 wind 1.0 10 > th dose independent rect. 6 5
385 70.30 precipitation 0.1 10 < th dose independent rect. 6 5
390 70.30 precipitation 0.1 10 < th dose dependent rect. 6 5
402 70.35 radiation 40.0 270 < th dose independent rect. 9 19
403 70.35 humidity 50.0 270 > th dose independent rect. 8 21
407 70.37 radiation 10.0 90 > th dose independent rect. 17 16
415 70.39 radiation 1.0 90 > th dose independent rect. 6 3
440 70.47 wind 5.0 4320 > th dose dependent rect. 14 2
462 70.52 temperature 10.0 10 > th dose dependent rect. 11 19
465 70.53 atmosphere 1015.0 90 < th dose independent rect. 9 21
473 70.56 temperature 15.0 270 > th dose independent rect. 4 14
488 70.58 humidity 50.0 270 > th dose independent rect. 9 19
509 70.61 radiation 10.0 270 < th dose independent rect. 17 11
535 70.65 atmosphere 995.0 270 > th dose independent rect. 17 11
541 70.65 radiation 1.0 90 > th dose dependent rect. 5 4
543 70.66 temperature 10.0 270 > th dose independent rect. 13 11
544 70.66 temperature 10.0 270 > th dose independent rect. 24 13
545 70.66 atmosphere 995.0 270 > th dose independent rect. 24 13
546 70.66 atmosphere 1015.0 270 < th dose independent rect. 24 13
547 70.66 wind 9.0 10 < th dose independent rect. 11 19
562 70.67 atmosphere 1005.0 270 > th dose independent rect. 21 7
565 70.68 radiation 10.0 10 > th dose dependent rect. 8 1
572 70.69 wind 1.0 270 > th dose independent rect. 13 11
591 70.75 radiation 1.0 10 > th dose independent rect. 6 5
603 70.78 wind 1.0 90 > th dose dependent rect. 5 4
625 70.81 temperature 30.0 10 < th dose independent rect. 6 5
626 70.81 wind 9.0 10 < th dose dependent rect. 20 10
627 70.81 radiation 10.0 270 < th dose dependent rect. 17 11
652 70.86 atmosphere 1015.0 10 < th dose independent rect. 11 19
656 70.86 atmosphere 995.0 10 > th dose dependent rect. 6 5
663 70.87 humidity 50.0 720 > th dose dependent rect. 21 3
672 70.89 wind 9.0 270 < th dose independent rect. 4 14
676 70.90 wind 5.0 1440 < th dose independent rect. 14 1
713 70.95 wind 9.0 270 < th dose independent rect. 13 11
725 70.99 wind 3.0 10 < th dose independent rect. 8 1
752 71.04 wind 5.0 10 < th dose dependent rect. 8 1
780 71.08 precipitation 0.1 270 < th dose independent rect. 17 11
785 71.08 wind 9.0 10 < th dose dependent rect. 6 5
786 71.08 precipitation 0.1 270 < th dose dependent rect. 17 11
792 71.10 wind 1.0 270 > th dose independent rect. 9 19
798 71.11 wind 5.0 1440 > th dose independent rect. 14 1
803 71.12 humidity 50.0 10 > th dose dependent rect. 6 5
807 71.13 temperature 20.0 10 > th dose independent rect. 8 1
821 71.14 radiation 10.0 90 < th dose independent sin 11 NA
826 71.15 wind 9.0 270 < th dose independent rect. 24 13
861 71.22 wind 1.0 10 > th dose independent rect. 8 1
862 71.22 radiation 40.0 10 < th dose independent rect. 8 1
864 71.22 temperature 30.0 270 < th dose independent rect. 17 11
870 71.24 wind 7.0 10 < th dose independent rect. 8 1
872 71.24 temperature 10.0 10 > th dose independent rect. 8 1
874 71.24 temperature 30.0 10 < th dose independent rect. 8 1
875 71.24 humidity 50.0 10 > th dose independent rect. 8 1
877 71.24 atmosphere 995.0 10 > th dose independent rect. 8 1
878 71.24 atmosphere 1010.0 10 < th dose independent rect. 8 1
880 71.24 radiation 1.0 10 > th dose independent rect. 8 1
881 71.24 precipitation 0.1 10 < th dose independent rect. 8 1
885 71.24 temperature 10.0 10 > th dose independent rect. 9 23
889 71.24 precipitation 0.1 10 < th dose dependent rect. 8 1
894 71.25 radiation 20.0 10 < th dose dependent rect. 8 1
899 71.26 temperature 10.0 270 > th dose independent rect. 18 10
900 71.26 humidity 50.0 270 > th dose independent rect. 18 10
905 71.26 atmosphere 1015.0 270 < th dose independent rect. 4 14
932 71.29 atmosphere 995.0 270 > th dose independent rect. 8 9
962 71.32 temperature 10.0 1440 > th dose independent rect. 7 3
965 71.32 atmosphere 995.0 1440 > th dose independent rect. 7 3
966 71.32 atmosphere 1015.0 1440 < th dose independent rect. 7 3
974 71.32 temperature 10.0 1440 > th dose independent rect. 10 21
986 71.34 radiation 40.0 90 < th dose independent rect. 11 18