Os12g0553200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Disease resistance protein family protein.
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Os12g0553200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Disease resistance protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 32.6 | 0.268 | 9.32 | 1.21 | 0.931 | -0.863 | -0.465 | 3.17 | 0.43 | 20.9 | 25.8 | 646 | -- | -- |
| 34.26 | 0.273 | 9.37 | 0.809 | 0.848 | -0.516 | -0.173 | -- | 0.317 | 21.4 | 26.24 | 814 | -- | -- |
| 33.22 | 0.268 | 9.32 | 1.2 | 0.934 | -0.877 | -- | 3.05 | 0.417 | 20.9 | 26.1 | 649 | -- | -- |
| 34.33 | 0.273 | 9.37 | 0.783 | 0.862 | -0.538 | -- | -- | 0.318 | 21.3 | 26.1 | 797 | -- | -- |
| 63.95 | 0.374 | 9.31 | 0.986 | -- | -0.59 | -- | 2.75 | 0.374 | -- | 26.1 | 649 | -- | -- |
| 40.43 | 0.298 | 9.37 | 0.66 | 0.696 | -- | -0.327 | -- | 0.301 | 21.6 | -- | -- | -- | -- |
| 40.83 | 0.299 | 9.37 | 0.672 | 0.697 | -- | -- | -- | 0.302 | 21.6 | -- | -- | -- | -- |
| 61.08 | 0.366 | 9.33 | 0.818 | -- | -0.768 | -- | -- | 0.403 | -- | 13.69 | 4518 | -- | -- |
| 49.79 | 0.329 | 9.39 | -- | 0.807 | -0.365 | -- | -- | 0.221 | 21.4 | 26.69 | 771 | -- | -- |
| 69.59 | 0.39 | 9.35 | 0.678 | -- | -- | -- | -- | 0.3 | -- | -- | -- | -- | -- |
| 52.74 | 0.34 | 9.39 | -- | 0.699 | -- | -- | -- | 0.227 | 21.7 | -- | -- | -- | -- |
| 77.71 | 0.412 | 9.35 | -- | -- | -0.511 | -- | -- | 0.283 | -- | 13.69 | 4518 | -- | -- |
| 81.72 | 0.422 | 9.37 | -- | -- | -- | -- | -- | 0.225 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 32.50 | temperature | 15 | 90 | > th | dose dependent | rect. | 3 | 20 |
| 3 | 32.57 | temperature | 25 | 720 | > th | dose dependent | rect. | 7 | 14 |
| 33 | 32.75 | wind | 7 | 43200 | > th | dose independent | rect. | 15 | 6 |
| 34 | 32.75 | wind | 7 | 43200 | < th | dose independent | rect. | 14 | 17 |
| 39 | 32.76 | wind | 7 | 43200 | < th | dose independent | rect. | 15 | 6 |
| 42 | 32.77 | wind | 7 | 43200 | < th | dose independent | rect. | 14 | 11 |
| 43 | 32.77 | wind | 7 | 43200 | < th | dose independent | rect. | 14 | 13 |
| 45 | 32.77 | wind | 7 | 43200 | > th | dose independent | rect. | 14 | 18 |
| 53 | 32.80 | temperature | 25 | 720 | > th | dose dependent | sin | 23 | NA |
| 57 | 32.81 | wind | 7 | 43200 | > th | dose independent | rect. | 14 | 14 |
| 60 | 32.81 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 22 |
| 65 | 32.83 | wind | 7 | 43200 | > th | dose independent | rect. | 14 | 11 |
| 87 | 32.88 | wind | 5 | 43200 | > th | dose dependent | rect. | 15 | 7 |
| 91 | 32.89 | wind | 5 | 43200 | > th | dose dependent | rect. | 14 | 11 |
| 95 | 32.90 | wind | 7 | 43200 | < th | dose independent | rect. | 15 | 1 |
| 97 | 32.90 | wind | 5 | 43200 | > th | dose dependent | rect. | 15 | 9 |
| 112 | 32.93 | wind | 7 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 115 | 32.93 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 20 |
| 120 | 32.94 | temperature | 25 | 720 | > th | dose dependent | rect. | 14 | 23 |
| 164 | 33.02 | wind | 7 | 43200 | > th | dose independent | rect. | 15 | 1 |
| 189 | 33.05 | temperature | 15 | 270 | > th | dose dependent | rect. | 14 | 8 |
| 192 | 33.05 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 16 |
| 221 | 33.09 | temperature | 25 | 720 | > th | dose dependent | no | NA | NA |
| 234 | 33.11 | wind | 7 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 270 | 33.16 | temperature | 20 | 90 | > th | dose dependent | rect. | 16 | 7 |
| 286 | 33.19 | wind | 7 | 43200 | < th | dose independent | sin | 15 | NA |
| 300 | 33.21 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 3 |
| 303 | 33.22 | wind | 5 | 43200 | > th | dose dependent | sin | 16 | NA |
| 309 | 33.23 | wind | 7 | 43200 | > th | dose independent | sin | 15 | NA |
| 314 | 33.24 | wind | 7 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 324 | 33.26 | wind | 5 | 43200 | > th | dose dependent | rect. | 15 | 1 |
| 329 | 33.26 | temperature | 10 | 270 | > th | dose dependent | rect. | 1 | 21 |
| 357 | 33.30 | wind | 1 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 358 | 33.30 | wind | 9 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 393 | 33.33 | temperature | 25 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 440 | 33.38 | wind | 7 | 43200 | > th | dose independent | rect. | 18 | 3 |
| 497 | 33.44 | temperature | 10 | 1440 | > th | dose dependent | rect. | 15 | 3 |
| 573 | 33.51 | temperature | 20 | 10 | > th | dose dependent | rect. | 16 | 8 |
| 779 | 33.63 | radiation | 1 | 43200 | < th | dose dependent | rect. | 19 | 5 |
| 931 | 33.71 | humidity | 60 | 14400 | < th | dose independent | rect. | 17 | 16 |