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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0552900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Disease resistance protein family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.04 (0.0333) R2 : 0.292
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.97 (0.0895) R2dC : 0.201 R2C : 0.118
β3 : 1.18 (0.14) R2dE : 0.135 R2E : 0.0722
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.18 (0.074) R2dN8 : 0.0134 R2N8 : 0.0375
σ : 0.619
deviance : 174.96
__
_____
C
peak time of C : 17.7
E
wheather : temperature
threshold : 27.67
memory length : 14
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
159.57 0.594 3.99 0.88 1.03 1.4 0.815 -1.39 -0.0107 17.6 28.26 10 -- --
162.16 0.598 4.02 0.654 1.04 1.47 1.12 -- -0.0675 17.4 28.26 10 -- --
161.1 0.591 3.99 0.901 1.02 1.37 -- -1.55 -0.013 17.6 28.08 14 -- --
165.15 0.599 4.01 0.633 1.04 1.41 -- -- -0.0543 17.5 27.67 14 -- --
205.4 0.671 4 0.739 -- 1.04 -- -1.4 -0.138 -- 24.6 2 -- --
193.17 0.652 4.09 0.313 0.83 -- 0.754 -- -0.372 19 -- -- -- --
194.64 0.653 4.09 0.298 0.831 -- -- -- -0.37 19.1 -- -- -- --
208.87 0.676 4.03 0.541 -- 1.15 -- -- -0.184 -- 24.48 2 -- --
174.96 0.619 4.04 -- 0.97 1.18 -- -- -0.18 17.7 27.67 14 -- --
231.11 0.71 4.07 0.282 -- -- -- -- -0.385 -- -- -- -- --
196.97 0.657 4.1 -- 0.828 -- -- -- -0.404 19.2 -- -- -- --
216 0.687 4.05 -- -- 0.995 -- -- -0.281 -- 24.1 2 -- --
233.2 0.713 4.08 -- -- -- -- -- -0.416 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 157.42 wind 9 43200 < th dose independent rect. 18 4
2 157.48 wind 7 43200 > th dose dependent rect. 18 3
3 157.63 wind 7 43200 > th dose independent rect. 18 3
5 157.93 temperature 30 10 < th dose dependent rect. 21 23
6 157.96 wind 9 43200 > th dose independent rect. 18 5
12 158.67 wind 9 43200 > th dose dependent rect. 18 5
30 159.71 wind 9 43200 < th dose independent rect. 18 7
35 159.93 temperature 30 10 < th dose dependent rect. 9 23
37 160.00 wind 9 43200 > th dose independent rect. 18 7
38 160.04 temperature 30 10 < th dose dependent rect. 3 23
43 160.15 wind 9 43200 > th dose independent rect. 18 12
49 160.34 wind 9 43200 < th dose independent rect. 18 12
51 160.42 wind 9 43200 > th dose dependent rect. 18 12
53 160.47 temperature 30 10 < th dose dependent no NA NA
55 160.56 temperature 30 10 < th dose dependent rect. 13 23
56 160.57 radiation 1 4320 > th dose dependent rect. 5 1
76 160.78 temperature 30 10 < th dose dependent rect. 11 23
78 160.80 temperature 30 10 < th dose dependent rect. 15 23
102 161.25 temperature 15 90 > th dose dependent rect. 1 23
105 161.27 temperature 30 10 < th dose dependent rect. 19 23
108 161.31 radiation 20 4320 > th dose dependent rect. 16 15
130 161.66 temperature 15 10 > th dose dependent no NA NA
138 161.73 temperature 15 10 > th dose dependent rect. 1 23
143 161.79 temperature 30 10 < th dose dependent rect. 5 23
148 161.87 radiation 10 4320 < th dose independent rect. 2 5
158 161.95 radiation 10 4320 < th dose independent rect. 23 8
173 161.99 radiation 10 4320 < th dose independent rect. 19 12
183 162.08 radiation 40 4320 < th dose dependent rect. 1 5
186 162.09 temperature 30 10 < th dose dependent rect. 17 23
200 162.18 temperature 30 10 < th dose dependent rect. 23 23
210 162.30 wind 7 43200 > th dose independent sin 14 NA
230 162.44 wind 7 43200 < th dose independent sin 14 NA
249 162.57 temperature 25 90 < th dose dependent rect. 23 23
260 162.61 wind 7 43200 < th dose independent rect. 14 18
262 162.62 humidity 60 14400 < th dose independent rect. 18 1
284 162.68 radiation 20 4320 < th dose independent rect. 16 15
298 162.76 humidity 60 14400 > th dose independent rect. 18 1
331 162.95 wind 7 43200 > th dose dependent sin 14 NA
354 163.08 radiation 30 4320 < th dose dependent rect. 23 7
372 163.16 radiation 20 4320 < th dose dependent rect. 21 9
389 163.21 temperature 30 10 < th dose dependent rect. 1 23
404 163.26 temperature 15 270 > th dose dependent rect. 15 23
414 163.31 wind 7 43200 > th dose dependent rect. 14 18
419 163.32 radiation 20 4320 < th dose dependent rect. 19 11
440 163.43 temperature 15 90 > th dose dependent rect. 6 23
445 163.45 temperature 20 10 > th dose dependent rect. 11 23
469 163.56 humidity 60 14400 > th dose independent rect. 18 11
481 163.62 humidity 60 14400 > th dose independent rect. 18 3
486 163.63 humidity 60 14400 > th dose independent rect. 18 14
490 163.65 humidity 60 14400 > th dose independent rect. 18 6
546 163.86 temperature 15 90 > th dose dependent rect. 11 23
575 163.96 humidity 60 14400 < th dose independent rect. 18 14
585 164.01 humidity 60 14400 < th dose dependent rect. 17 2
591 164.04 radiation 20 4320 > th dose dependent rect. 16 1
613 164.07 temperature 25 90 < th dose dependent rect. 1 22
614 164.07 temperature 20 10 > th dose dependent rect. 4 23
643 164.20 radiation 10 14400 < th dose independent rect. 17 3
648 164.21 humidity 60 14400 < th dose dependent rect. 17 4
681 164.27 radiation 10 14400 < th dose independent rect. 17 7
729 164.47 humidity 60 14400 < th dose independent rect. 18 4
742 164.49 wind 9 14400 < th dose independent rect. 11 1
766 164.60 temperature 20 10 > th dose dependent rect. 17 23
796 164.74 temperature 30 4320 < th dose dependent rect. 1 1
813 164.80 temperature 10 4320 > th dose dependent rect. 1 1
858 164.96 wind 7 14400 > th dose dependent rect. 11 1
896 165.08 wind 7 43200 > th dose independent rect. 6 21
902 165.10 wind 7 43200 < th dose independent rect. 6 21
941 165.18 wind 7 43200 > th dose independent no NA NA
957 165.20 wind 7 43200 > th dose independent rect. 17 23
969 165.22 wind 7 43200 < th dose independent no NA NA
980 165.23 temperature 25 90 < th dose dependent rect. 3 20
994 165.26 wind 7 43200 > th dose independent rect. 23 23