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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0550800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.92 (0.0334) R2 : 0.246
β1 : 1.46 (0.158) R2dD : 0.257 R2D : -0.0553
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.95 (0.201) R2dE : 0.295 R2E : -0.0153
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0376 (0.0779) R2dN8 : 0.000622 R2N8 : 0.0111
σ : 0.608
deviance : 170.23
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 17.81
memory length : 7212
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
154.29 0.584 4.01 1.47 0.239 2.67 -1.72 2.81 0.00293 19.7 18.7 7431 -- --
159.37 0.588 3.93 1.46 0.26 1.92 -1.61 -- -0.0388 19.5 17.9 7561 -- --
162.75 0.594 4.01 1.47 0.242 2.68 -- 2.81 -0.0106 20.3 18.76 7397 -- --
167.45 0.603 3.92 1.49 0.234 1.92 -- -- -0.0241 19.7 17.9 7376 -- --
165.81 0.6 4 1.51 -- 2.64 -- 2.72 -0.00195 -- 18.7 7340 -- --
193.7 0.652 4 0.407 0.237 -- -1.78 -- -0.376 19.6 -- -- -- --
202.62 0.667 4 0.45 0.235 -- -- -- -0.379 19.9 -- -- -- --
170.23 0.608 3.92 1.46 -- 1.95 -- -- -0.0376 -- 17.81 7212 -- --
202.2 0.666 4.01 -- 0.231 0.858 -- -- -0.409 19.8 17.38 14053 -- --
205.63 0.67 3.99 0.448 -- -- -- -- -0.382 -- -- -- -- --
207.97 0.675 4.01 -- 0.232 -- -- -- -0.429 20 -- -- -- --
185.8 0.635 3.95 -- -- 0.766 -- -- -0.195 -- 22.39 1383 -- --
210.92 0.678 4.01 -- -- -- -- -- -0.431 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 154.48 temperature 30 270 < th dose dependent rect. 23 22
4 155.51 temperature 25 270 < th dose dependent rect. 1 20
5 155.95 temperature 30 270 < th dose dependent rect. 9 23
28 157.34 wind 9 14400 < th dose independent rect. 11 1
30 157.59 temperature 20 4320 < th dose dependent rect. 1 1
32 157.67 temperature 30 30 < th dose dependent rect. 19 23
33 157.68 wind 9 14400 > th dose independent rect. 11 1
46 158.23 wind 9 14400 > th dose independent rect. 4 9
47 158.23 temperature 25 10 < th dose dependent sin 23 NA
48 158.27 wind 7 14400 > th dose dependent rect. 11 1
51 158.28 temperature 25 90 < th dose dependent rect. 5 16
52 158.29 temperature 10 270 > th dose dependent rect. 16 23
57 158.34 temperature 25 10 < th dose dependent rect. 4 17
67 158.48 temperature 30 4320 < th dose dependent rect. 1 1
71 158.49 wind 9 14400 < th dose independent rect. 5 7
74 158.51 temperature 10 4320 > th dose dependent rect. 1 1
81 158.63 temperature 10 270 > th dose dependent rect. 3 23
82 158.65 wind 9 14400 > th dose independent sin 5 NA
85 158.66 temperature 10 270 > th dose dependent rect. 14 23
87 158.67 temperature 30 30 < th dose dependent rect. 15 23
89 158.70 temperature 30 90 < th dose dependent no NA NA
91 158.72 temperature 30 30 < th dose dependent rect. 13 23
97 158.76 temperature 10 270 > th dose dependent rect. 5 23
142 159.14 wind 9 14400 > th dose independent rect. 22 16
156 159.25 temperature 10 30 > th dose dependent no NA NA
158 159.27 wind 9 14400 < th dose independent rect. 4 9
160 159.28 wind 9 14400 < th dose independent sin 5 NA
164 159.31 temperature 20 4320 < th dose dependent rect. 21 8
180 159.36 temperature 25 4320 < th dose dependent rect. 16 12
181 159.36 temperature 25 4320 < th dose dependent rect. 15 14
196 159.41 temperature 10 4320 > th dose dependent rect. 3 1
223 159.48 temperature 25 1440 < th dose dependent rect. 10 19
283 159.68 humidity 50 14400 < th dose independent rect. 11 4
294 159.70 temperature 25 4320 < th dose dependent sin 14 NA
376 159.94 wind 9 14400 < th dose independent rect. 23 15
401 159.99 temperature 20 4320 < th dose dependent sin 10 NA
437 160.06 humidity 50 14400 < th dose dependent rect. 17 22
444 160.08 wind 9 14400 > th dose dependent sin 5 NA
483 160.13 temperature 25 1440 < th dose dependent rect. 13 23
540 160.24 temperature 25 1440 < th dose dependent no NA NA
556 160.25 temperature 25 1440 < th dose dependent rect. 3 23
562 160.26 temperature 25 1440 < th dose dependent rect. 20 23
572 160.28 humidity 50 14400 < th dose dependent rect. 9 6
589 160.29 temperature 25 4320 < th dose dependent rect. 21 1
635 160.33 humidity 50 14400 < th dose dependent sin 8 NA
652 160.35 humidity 50 14400 < th dose dependent rect. 13 2
672 160.38 wind 9 14400 > th dose dependent rect. 22 17
690 160.41 humidity 50 14400 < th dose independent rect. 8 6
728 160.44 temperature 20 4320 < th dose dependent rect. 21 17
742 160.46 wind 9 14400 > th dose independent rect. 21 20
763 160.48 humidity 50 14400 > th dose independent rect. 17 16
771 160.48 temperature 15 10 > th dose dependent rect. 21 23
782 160.50 wind 9 14400 < th dose independent rect. 9 3
853 160.57 humidity 50 14400 < th dose dependent rect. 12 4
878 160.60 wind 9 14400 > th dose independent rect. 9 4
899 160.63 humidity 50 14400 < th dose dependent no NA NA