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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0550700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF635 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.91 (0.0335) R2 : 0.239
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 0.929 (0.102) R2dE : 0.139 R2E : 0.133
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.494 (0.0707) R2dN8 : 0.106 R2N8 : 0.0996
σ : 0.628
deviance : 182.1
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_____
C
peak time of C : --
E
wheather : humidity
threshold : 58.87
memory length : 67
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 13.2
open length of G : 4.44

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
176.52 0.624 2.91 0.25 0.1 0.936 -0.842 0.636 0.505 5.33 59 72 13.1 5.09
177.17 0.62 2.91 0.25 0.111 0.919 -1.24 -- 0.506 5.35 58.57 63 13.2 5.18
177.34 0.62 2.91 0.244 0.099 0.927 -- 1.14 0.507 3.13 59.55 62 13.2 5.08
180.62 0.626 2.91 0.247 0.0983 0.885 -- -- 0.519 2.68 58.13 63 13.2 5.08
177.69 0.621 2.91 0.249 -- 0.882 -- 1.16 0.515 -- 59 62 13.2 5.02
204.36 0.67 2.9 0.21 0.386 -- 0.858 -- 0.574 17.5 -- -- -- --
206.16 0.672 2.9 0.207 0.391 -- -- -- 0.578 17.3 -- -- -- --
181.08 0.627 2.91 0.246 -- 0.837 -- -- 0.526 -- 58.66 62 13.2 5.03
182.1 0.628 2.91 -- 0.1 0.892 -- -- 0.498 2.28 58.61 71 13.1 4.88
214.14 0.684 2.9 0.194 -- -- -- -- 0.568 -- -- -- -- --
207.3 0.673 2.91 -- 0.387 -- -- -- 0.555 17.3 -- -- -- --
182.1 0.628 2.91 -- -- 0.929 -- -- 0.494 -- 58.87 67 13.2 4.44
215.13 0.685 2.9 -- -- -- -- -- 0.546 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 177.48 humidity 60.0 90 > th dose independent rect. 13 5
6 179.56 temperature 30.0 270 > th dose independent rect. 13 1
10 180.55 temperature 25.0 30 > th dose independent rect. 18 19
11 180.60 radiation 20.0 270 > th dose independent rect. 13 2
16 181.35 radiation 20.0 90 > th dose independent rect. 13 4
31 181.42 temperature 10.0 90 > th dose dependent rect. 17 20
32 181.71 temperature 25.0 30 > th dose dependent rect. 13 4
35 181.91 temperature 25.0 270 > th dose dependent rect. 13 1
37 182.28 radiation 40.0 270 > th dose independent rect. 13 1
41 182.50 temperature 10.0 10 > th dose dependent rect. 18 19
50 183.12 humidity 60.0 270 > th dose independent rect. 13 2
69 183.17 atmosphere 1005.0 90 > th dose independent rect. 14 3
73 183.25 radiation 1.0 270 > th dose dependent rect. 13 2
78 183.38 humidity 90.0 30 < th dose independent rect. 17 20
79 183.40 humidity 50.0 90 > th dose independent rect. 1 16
85 183.59 atmosphere 1005.0 10 > th dose dependent rect. 14 4
88 183.64 atmosphere 1005.0 10 > th dose independent rect. 14 4
92 183.82 wind 1.0 10 > th dose dependent rect. 14 4
109 183.87 atmosphere 995.0 90 > th dose dependent rect. 13 4
117 183.96 wind 5.0 10 > th dose independent rect. 14 4
120 184.02 humidity 70.0 270 < th dose independent rect. 13 1
150 184.31 temperature 10.0 90 > th dose dependent rect. 17 8
158 184.43 radiation 40.0 10 < th dose independent rect. 13 5
162 184.57 radiation 20.0 90 > th dose independent sin 14 NA
167 184.62 wind 1.0 90 > th dose dependent rect. 13 4
173 184.71 temperature 25.0 90 > th dose independent rect. 13 4
174 184.72 wind 7.0 270 < th dose independent rect. 13 1
197 184.80 humidity 80.0 90 < th dose independent rect. 13 4
199 184.81 humidity 50.0 270 > th dose independent rect. 12 15
204 184.83 wind 5.0 90 > th dose independent rect. 13 4
210 184.88 wind 5.0 90 > th dose independent rect. 13 6
211 184.90 wind 5.0 270 > th dose independent rect. 13 2
238 185.07 atmosphere 995.0 90 > th dose independent rect. 17 20
245 185.13 temperature 30.0 30 < th dose independent rect. 13 5
253 185.20 radiation 1.0 90 > th dose dependent rect. 13 4
255 185.22 radiation 40.0 270 > th dose independent sin 14 NA
256 185.22 precipitation 0.1 270 < th dose independent rect. 15 22
258 185.22 precipitation 0.1 270 < th dose dependent rect. 15 22
268 185.32 radiation 1.0 90 > th dose dependent rect. 13 16
283 185.36 wind 1.0 90 > th dose independent rect. 13 4
284 185.39 humidity 50.0 90 > th dose independent rect. 16 1
294 185.44 wind 1.0 90 > th dose independent rect. 17 20
300 185.51 precipitation 0.1 90 < th dose independent rect. 17 20
301 185.51 precipitation 0.1 90 < th dose dependent rect. 17 20
302 185.52 wind 9.0 90 < th dose independent rect. 13 4
337 185.76 temperature 20.0 270 > th dose independent rect. 13 2
345 185.85 temperature 10.0 10 > th dose dependent rect. 18 7
348 185.87 atmosphere 995.0 90 > th dose independent rect. 13 4
350 185.88 atmosphere 995.0 270 > th dose dependent rect. 13 2
368 186.07 humidity 50.0 270 > th dose independent rect. 23 18
372 186.08 temperature 10.0 90 > th dose independent rect. 13 4
374 186.08 atmosphere 1010.0 90 < th dose independent rect. 13 4
376 186.08 precipitation 0.1 90 < th dose independent rect. 13 4
377 186.08 temperature 10.0 90 > th dose independent rect. 17 20
378 186.08 precipitation 0.1 90 < th dose dependent rect. 13 4
402 186.28 atmosphere 995.0 90 > th dose independent rect. 17 8
405 186.30 wind 1.0 270 > th dose independent rect. 13 2
409 186.33 wind 9.0 90 < th dose independent rect. 17 20
414 186.36 temperature 10.0 270 > th dose independent rect. 13 2
416 186.36 atmosphere 1010.0 270 < th dose independent rect. 13 2
418 186.36 temperature 10.0 270 > th dose independent rect. 15 22
437 186.40 precipitation 0.1 270 < th dose independent rect. 13 2
438 186.40 precipitation 0.1 270 < th dose dependent rect. 13 2
445 186.44 wind 1.0 270 > th dose dependent rect. 13 2
491 186.61 atmosphere 995.0 270 > th dose independent rect. 15 22
493 186.63 atmosphere 995.0 270 > th dose independent rect. 13 2
526 186.80 wind 9.0 90 < th dose independent rect. 1 16
532 186.84 wind 9.0 10 < th dose independent rect. 13 5
541 186.88 wind 1.0 90 < th dose dependent rect. 24 1
557 186.96 precipitation 0.1 90 < th dose independent rect. 17 8
558 186.96 precipitation 0.1 90 < th dose dependent rect. 17 8
580 186.99 radiation 40.0 30 < th dose independent rect. 1 16
614 187.18 humidity 60.0 30 > th dose independent rect. 13 17
635 187.22 temperature 25.0 30 > th dose independent sin 9 NA
677 187.32 atmosphere 995.0 10 > th dose independent rect. 17 21
718 187.48 radiation 10.0 43200 < th dose dependent rect. 19 7
722 187.49 temperature 10.0 90 > th dose independent rect. 17 8
723 187.49 radiation 20.0 90 < th dose independent rect. 17 8
726 187.49 temperature 10.0 90 > th dose independent rect. 1 16
727 187.49 atmosphere 1015.0 90 < th dose independent rect. 1 16
742 187.51 precipitation 0.1 90 < th dose independent rect. 1 16
743 187.51 precipitation 0.1 90 < th dose dependent rect. 1 16
745 187.52 temperature 10.0 90 > th dose dependent rect. 3 10
763 187.62 wind 9.0 270 < th dose independent rect. 15 22
765 187.64 atmosphere 995.0 90 > th dose independent rect. 1 16
767 187.65 atmosphere 995.0 10 > th dose independent rect. 18 19
776 187.71 humidity 60.0 90 > th dose independent rect. 13 20
779 187.72 wind 9.0 90 < th dose independent rect. 17 8
788 187.76 temperature 10.0 10 > th dose independent rect. 13 5
790 187.76 atmosphere 1010.0 10 < th dose independent rect. 13 5
792 187.76 temperature 10.0 10 > th dose independent rect. 18 19
807 187.81 wind 9.0 270 < th dose dependent rect. 13 1
832 187.83 wind 9.0 10 < th dose independent rect. 18 19
879 187.97 precipitation 0.1 10 < th dose independent rect. 13 5
882 187.97 precipitation 0.1 10 < th dose dependent rect. 13 5
889 187.98 radiation 40.0 90 < th dose dependent rect. 17 8
914 188.08 wind 9.0 10 < th dose independent rect. 1 17
920 188.10 wind 5.0 10 > th dose independent rect. 14 10
963 188.17 temperature 25.0 30 > th dose independent rect. 18 15