Os12g0549700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os12g0549700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 77.76 | 0.414 | 10.5 | 0.284 | 1.39 | -1.44 | -0.0149 | -0.404 | 0.149 | 19.6 | 29.3 | 88 | -- | -- |
| 77.97 | 0.411 | 10.5 | 0.226 | 1.4 | -1.42 | -0.0299 | -- | 0.133 | 19.6 | 29.38 | 84 | -- | -- |
| 77.76 | 0.411 | 10.5 | 0.284 | 1.39 | -1.44 | -- | -0.404 | 0.149 | 19.6 | 29.3 | 87 | -- | -- |
| 77.95 | 0.411 | 10.5 | 0.219 | 1.4 | -1.44 | -- | -- | 0.133 | 19.6 | 29.41 | 80 | -- | -- |
| 152.2 | 0.575 | 10.5 | 0.0214 | -- | -2.43 | -- | 0.0415 | 0.052 | -- | 41.55 | 357 | -- | -- |
| 105.34 | 0.481 | 10.4 | 0.575 | 1.61 | -- | 0.199 | -- | 0.421 | 18.5 | -- | -- | -- | -- |
| 105.44 | 0.481 | 10.4 | 0.572 | 1.61 | -- | -- | -- | 0.422 | 18.5 | -- | -- | -- | -- |
| 152.2 | 0.575 | 10.5 | 0.0279 | -- | -2.43 | -- | -- | 0.0537 | -- | 43.79 | 357 | -- | -- |
| 79.08 | 0.414 | 10.5 | -- | 1.4 | -1.52 | -- | -- | 0.0925 | 19.6 | 29.39 | 80 | -- | -- |
| 240.44 | 0.725 | 10.4 | 0.532 | -- | -- | -- | -- | 0.388 | -- | -- | -- | -- | -- |
| 114.07 | 0.5 | 10.4 | -- | 1.6 | -- | -- | -- | 0.358 | 18.5 | -- | -- | -- | -- |
| 152.22 | 0.575 | 10.5 | -- | -- | -2.44 | -- | -- | 0.0494 | -- | 56.94 | 359 | -- | -- |
| 247.9 | 0.735 | 10.4 | -- | -- | -- | -- | -- | 0.329 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 71.10 | temperature | 10 | 90 | > th | dose dependent | rect. | 6 | 23 |
| 3 | 71.60 | temperature | 15 | 10 | > th | dose dependent | rect. | 6 | 23 |
| 7 | 72.18 | temperature | 15 | 270 | > th | dose dependent | rect. | 21 | 13 |
| 40 | 75.59 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 22 |
| 49 | 76.01 | temperature | 15 | 90 | > th | dose dependent | sin | 7 | NA |
| 58 | 76.38 | temperature | 30 | 90 | < th | dose dependent | sin | 7 | NA |
| 64 | 76.57 | temperature | 30 | 90 | < th | dose dependent | rect. | 1 | 23 |
| 77 | 77.06 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 22 |
| 84 | 77.27 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 87 | 77.37 | temperature | 30 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 111 | 77.90 | temperature | 30 | 10 | < th | dose dependent | rect. | 14 | 22 |
| 118 | 77.99 | temperature | 30 | 90 | < th | dose dependent | rect. | 19 | 23 |
| 119 | 78.00 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 140 | 78.33 | temperature | 30 | 10 | < th | dose dependent | rect. | 10 | 23 |
| 143 | 78.38 | temperature | 30 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 157 | 78.53 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 20 |
| 198 | 79.10 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 17 |
| 212 | 79.25 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 21 |
| 272 | 79.81 | temperature | 30 | 10 | < th | dose dependent | rect. | 16 | 16 |
| 278 | 79.89 | temperature | 15 | 90 | > th | dose dependent | rect. | 21 | 23 |
| 307 | 80.16 | temperature | 15 | 90 | > th | dose dependent | no | NA | NA |
| 393 | 80.66 | temperature | 15 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 435 | 80.99 | temperature | 20 | 270 | > th | dose independent | rect. | 6 | 21 |
| 456 | 81.11 | temperature | 15 | 90 | > th | dose dependent | rect. | 15 | 23 |
| 637 | 82.25 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 15 |
| 647 | 82.29 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 701 | 82.55 | temperature | 20 | 90 | > th | dose dependent | rect. | 22 | 6 |
| 823 | 83.05 | temperature | 20 | 10 | > th | dose independent | rect. | 8 | 21 |
| 846 | 83.13 | temperature | 20 | 270 | > th | dose independent | rect. | 21 | 14 |
| 878 | 83.33 | temperature | 20 | 90 | > th | dose independent | rect. | 22 | 6 |
| 915 | 83.46 | temperature | 15 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 929 | 83.51 | temperature | 15 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 939 | 83.55 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 6 |
| 959 | 83.60 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 10 |