Os12g0548800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os12g0548800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 90.18 | 0.446 | 7.51 | 0.727 | 0.954 | -3.15 | -0.193 | -4.01 | 0.452 | 22.9 | 19.26 | 10638 | -- | -- |
| 98.34 | 0.462 | 7.68 | 0.551 | 0.891 | -1.25 | -0.128 | -- | 0.233 | 23 | 55.17 | 44107 | -- | -- |
| 89.93 | 0.442 | 7.52 | 0.746 | 0.965 | -3.19 | -- | -4.07 | 0.447 | 22.9 | 18.64 | 10607 | -- | -- |
| 98.33 | 0.462 | 7.69 | 0.563 | 0.935 | -1.23 | -- | -- | 0.245 | 22.8 | 538.4 | 44031 | -- | -- |
| 146.69 | 0.564 | 7.49 | 0.735 | -- | -3.14 | -- | -3.9 | 0.458 | -- | 18.89 | 10754 | -- | -- |
| 111.65 | 0.495 | 7.58 | 1.85 | 0.972 | -- | -0.174 | -- | 0.737 | 23 | -- | -- | -- | -- |
| 111.78 | 0.495 | 7.58 | 1.85 | 0.973 | -- | -- | -- | 0.737 | 23 | -- | -- | -- | -- |
| 149.41 | 0.569 | 7.62 | 1.05 | -- | -1.56 | -- | -- | 0.453 | -- | 21.15 | 8040 | -- | -- |
| 102.01 | 0.47 | 7.73 | -- | 0.944 | -1.61 | -- | -- | 0.0496 | 22.9 | 549.1 | 47520 | -- | -- |
| 170.67 | 0.61 | 7.55 | 1.87 | -- | -- | -- | -- | 0.744 | -- | -- | -- | -- | -- |
| 202.28 | 0.665 | 7.62 | -- | 0.99 | -- | -- | -- | 0.531 | 23.1 | -- | -- | -- | -- |
| 152.91 | 0.576 | 7.69 | -- | -- | -1.76 | -- | -- | 0.144 | -- | 21.09 | 47520 | -- | -- |
| 263.37 | 0.757 | 7.6 | -- | -- | -- | -- | -- | 0.536 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 78.14 | wind | 7 | 43200 | > th | dose dependent | rect. | 18 | 2 |
| 2 | 79.82 | wind | 7 | 43200 | > th | dose independent | rect. | 18 | 2 |
| 3 | 80.98 | wind | 7 | 43200 | < th | dose independent | rect. | 18 | 2 |
| 8 | 82.25 | wind | 7 | 43200 | > th | dose dependent | rect. | 16 | 4 |
| 22 | 84.40 | humidity | 90 | 43200 | < th | dose independent | rect. | 4 | 1 |
| 27 | 84.85 | wind | 1 | 14400 | < th | dose independent | rect. | 23 | 3 |
| 28 | 84.98 | wind | 7 | 43200 | < th | dose independent | rect. | 14 | 18 |
| 34 | 85.11 | wind | 7 | 43200 | > th | dose independent | rect. | 15 | 17 |
| 42 | 85.19 | wind | 1 | 14400 | > th | dose independent | rect. | 23 | 3 |
| 47 | 85.22 | humidity | 70 | 43200 | > th | dose dependent | rect. | 1 | 8 |
| 51 | 85.23 | humidity | 70 | 43200 | > th | dose dependent | rect. | 19 | 14 |
| 91 | 85.39 | wind | 3 | 43200 | > th | dose independent | rect. | 17 | 7 |
| 98 | 85.42 | wind | 1 | 43200 | > th | dose independent | rect. | 5 | 22 |
| 110 | 85.46 | humidity | 70 | 43200 | > th | dose dependent | sin | 10 | NA |
| 113 | 85.47 | wind | 3 | 43200 | < th | dose independent | rect. | 17 | 7 |
| 140 | 85.57 | wind | 1 | 14400 | > th | dose independent | rect. | 23 | 5 |
| 158 | 85.61 | wind | 1 | 43200 | < th | dose dependent | rect. | 5 | 19 |
| 162 | 85.63 | wind | 3 | 43200 | < th | dose independent | rect. | 14 | 10 |
| 183 | 85.67 | humidity | 80 | 43200 | > th | dose dependent | rect. | 4 | 1 |
| 189 | 85.68 | wind | 1 | 43200 | > th | dose independent | rect. | 5 | 19 |
| 195 | 85.69 | wind | 3 | 43200 | > th | dose independent | rect. | 14 | 10 |
| 200 | 85.70 | wind | 1 | 43200 | < th | dose independent | rect. | 5 | 21 |
| 211 | 85.72 | wind | 1 | 14400 | > th | dose dependent | rect. | 13 | 16 |
| 212 | 85.72 | wind | 9 | 14400 | < th | dose dependent | rect. | 13 | 16 |
| 218 | 85.73 | wind | 3 | 14400 | > th | dose dependent | rect. | 15 | 13 |
| 222 | 85.74 | wind | 3 | 14400 | > th | dose dependent | sin | 15 | NA |
| 231 | 85.75 | wind | 1 | 43200 | > th | dose independent | rect. | 10 | 23 |
| 274 | 85.82 | humidity | 60 | 43200 | > th | dose dependent | rect. | 24 | 1 |
| 287 | 85.84 | wind | 1 | 43200 | > th | dose independent | rect. | 20 | 22 |
| 294 | 85.85 | wind | 3 | 43200 | < th | dose dependent | rect. | 13 | 11 |
| 299 | 85.86 | wind | 1 | 43200 | > th | dose independent | rect. | 16 | 23 |
| 301 | 85.86 | humidity | 60 | 43200 | > th | dose dependent | rect. | 23 | 4 |
| 367 | 85.92 | humidity | 50 | 43200 | > th | dose dependent | rect. | 2 | 1 |
| 368 | 85.92 | wind | 3 | 43200 | < th | dose dependent | rect. | 13 | 2 |
| 380 | 85.93 | wind | 1 | 43200 | < th | dose dependent | rect. | 6 | 6 |
| 384 | 85.93 | wind | 3 | 43200 | < th | dose dependent | rect. | 9 | 8 |
| 406 | 85.96 | wind | 1 | 43200 | > th | dose independent | no | NA | NA |
| 411 | 85.96 | wind | 1 | 43200 | < th | dose dependent | rect. | 6 | 8 |
| 441 | 85.99 | wind | 3 | 43200 | < th | dose dependent | rect. | 8 | 16 |
| 483 | 86.04 | wind | 3 | 14400 | > th | dose dependent | rect. | 17 | 7 |
| 504 | 86.06 | wind | 1 | 43200 | < th | dose independent | rect. | 12 | 2 |
| 531 | 86.09 | humidity | 90 | 43200 | > th | dose independent | rect. | 4 | 1 |
| 534 | 86.09 | wind | 3 | 43200 | < th | dose independent | rect. | 9 | 15 |
| 535 | 86.09 | wind | 1 | 43200 | > th | dose independent | rect. | 7 | 23 |
| 553 | 86.11 | wind | 1 | 43200 | > th | dose independent | rect. | 13 | 23 |
| 561 | 86.12 | wind | 9 | 14400 | < th | dose dependent | sin | 15 | NA |
| 573 | 86.13 | wind | 1 | 43200 | > th | dose independent | rect. | 12 | 2 |
| 590 | 86.15 | wind | 3 | 43200 | > th | dose independent | sin | 17 | NA |
| 594 | 86.15 | wind | 3 | 43200 | < th | dose dependent | sin | 20 | NA |
| 602 | 86.16 | wind | 3 | 43200 | > th | dose independent | rect. | 10 | 14 |
| 621 | 86.18 | wind | 3 | 43200 | < th | dose independent | sin | 18 | NA |
| 647 | 86.21 | wind | 1 | 43200 | > th | dose independent | rect. | 5 | 10 |
| 683 | 86.23 | wind | 3 | 14400 | > th | dose dependent | rect. | 13 | 21 |
| 694 | 86.24 | humidity | 90 | 43200 | < th | dose dependent | rect. | 23 | 1 |
| 711 | 86.26 | wind | 1 | 43200 | < th | dose independent | rect. | 9 | 6 |
| 714 | 86.26 | humidity | 90 | 43200 | < th | dose dependent | rect. | 22 | 3 |
| 788 | 86.32 | humidity | 90 | 43200 | < th | dose dependent | rect. | 21 | 6 |
| 812 | 86.34 | wind | 1 | 43200 | < th | dose dependent | rect. | 10 | 4 |
| 840 | 86.37 | wind | 1 | 43200 | < th | dose independent | rect. | 6 | 9 |
| 847 | 86.38 | wind | 1 | 43200 | > th | dose independent | rect. | 9 | 7 |
| 865 | 86.40 | humidity | 80 | 43200 | > th | dose independent | rect. | 21 | 18 |
| 894 | 86.43 | wind | 3 | 43200 | < th | dose independent | rect. | 14 | 1 |
| 900 | 86.43 | wind | 1 | 43200 | < th | dose independent | rect. | 19 | 23 |