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Os12g0547100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 13.9 (0.0171) R2 : 0.783
β1 : -2.16 (0.0625) R2dD : 0.588 R2D : 0.498
β2 : 0.884 (0.0405) R2dC : 0.228 R2C : 0.201
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.334 (0.0364) R2dN8 : 0.0536 R2N8 : -0.0205
σ : 0.321
deviance : 47
__
_____
C
peak time of C : 23.6
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
42.14 0.305 13.9 -2.3 0.909 -0.438 -0.164 -0.0418 -0.405 23.8 19.8 291 -- --
42.11 0.302 13.9 -2.3 0.9 -0.439 -0.159 -- -0.411 23.9 19.8 329 -- --
42.22 0.303 13.9 -2.3 0.899 -0.439 -- -0.0168 -0.405 23.8 19.78 332 -- --
42.22 0.303 13.9 -2.3 0.899 -0.435 -- -- -0.405 23.9 19.8 332 -- --
77.86 0.411 14 -2.5 -- -0.685 -- 0.504 -0.59 -- 25.21 882 -- --
46.95 0.321 13.9 -2.16 0.883 -- -0.107 -- -0.334 23.6 -- -- -- --
47 0.321 13.9 -2.16 0.884 -- -- -- -0.334 23.6 -- -- -- --
78.21 0.412 14 -2.35 -- -0.675 -- -- -0.571 -- 25.3 882 -- --
166.3 0.604 13.9 -- 0.8 0.203 -- -- -0.0114 23.3 23.9 108 -- --
96.09 0.458 13.9 -2.13 -- -- -- -- -0.324 -- -- -- -- --
169.52 0.609 13.9 -- 0.86 -- -- -- -0.0938 23.5 -- -- -- --
197.65 0.655 13.8 -- -- 0.477 -- -- -0.0656 -- 28 20 -- --
215.9 0.686 13.9 -- -- -- -- -- -0.0872 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 40.07 atmosphere 995.0 90 > th dose dependent rect. 19 12
2 40.37 atmosphere 995.0 720 > th dose dependent rect. 19 2
3 40.40 atmosphere 1000.0 720 > th dose independent rect. 19 2
4 40.63 atmosphere 1000.0 90 > th dose independent rect. 19 12
5 40.84 atmosphere 995.0 10 > th dose dependent rect. 20 12
7 41.10 atmosphere 1000.0 10 > th dose independent rect. 20 12
10 41.20 radiation 40.0 720 < th dose independent rect. 7 2
11 41.31 wind 9.0 43200 > th dose dependent rect. 18 14
14 41.36 temperature 20.0 270 > th dose independent rect. 13 22
15 41.37 atmosphere 995.0 14400 < th dose independent rect. 17 2
18 41.38 radiation 40.0 720 < th dose independent rect. 16 17
19 41.39 atmosphere 995.0 14400 < th dose dependent rect. 17 2
25 41.40 temperature 20.0 270 > th dose independent rect. 21 12
43 41.45 temperature 15.0 270 > th dose dependent rect. 21 12
46 41.51 temperature 10.0 720 > th dose dependent rect. 21 5
48 41.53 atmosphere 995.0 14400 > th dose independent rect. 17 1
55 41.60 atmosphere 995.0 720 > th dose independent rect. 9 22
65 41.69 temperature 20.0 720 > th dose independent rect. 21 4
69 41.70 temperature 20.0 270 > th dose independent rect. 14 19
72 41.71 wind 9.0 43200 > th dose independent rect. 18 15
73 41.71 temperature 20.0 90 > th dose independent rect. 7 22
82 41.76 atmosphere 995.0 720 > th dose independent rect. 9 7
89 41.81 temperature 20.0 720 > th dose independent rect. 16 10
93 41.81 wind 9.0 43200 > th dose dependent rect. 18 6
94 41.81 wind 9.0 43200 > th dose dependent rect. 18 9
95 41.82 temperature 20.0 720 > th dose independent rect. 23 1
99 41.83 wind 1.0 4320 < th dose independent rect. 10 1
104 41.87 temperature 20.0 720 > th dose independent rect. 7 19
112 41.90 temperature 15.0 720 > th dose dependent rect. 23 1
114 41.91 atmosphere 995.0 14400 > th dose independent rect. 12 7
149 41.93 atmosphere 1005.0 14400 < th dose independent rect. 22 2
155 41.95 atmosphere 995.0 14400 > th dose independent rect. 10 9
163 41.98 temperature 20.0 270 > th dose independent rect. 20 23
168 41.99 wind 9.0 43200 < th dose independent rect. 18 15
173 42.01 wind 5.0 4320 > th dose independent rect. 20 1
174 42.01 wind 1.0 4320 > th dose independent rect. 10 2
178 42.01 atmosphere 995.0 14400 > th dose independent rect. 7 12
194 42.02 temperature 20.0 270 < th dose independent rect. 15 18
196 42.02 temperature 20.0 270 < th dose independent rect. 11 22
204 42.04 temperature 30.0 90 < th dose dependent rect. 19 12
236 42.09 wind 5.0 4320 < th dose independent rect. 20 1
264 42.12 temperature 10.0 720 > th dose dependent rect. 7 2
274 42.15 atmosphere 1005.0 43200 > th dose independent rect. 22 1
292 42.20 temperature 20.0 90 > th dose independent rect. 15 13
294 42.20 temperature 20.0 270 < th dose independent rect. 18 23
295 42.20 temperature 10.0 720 > th dose dependent rect. 15 18
307 42.22 temperature 20.0 270 < th dose independent rect. 5 23
309 42.23 temperature 20.0 270 < th dose independent no NA NA
318 42.24 temperature 20.0 270 > th dose independent no NA NA
319 42.24 wind 9.0 43200 > th dose independent rect. 18 9
320 42.24 temperature 20.0 270 < th dose independent rect. 8 23
330 42.26 wind 9.0 43200 > th dose independent rect. 18 6
334 42.26 temperature 20.0 270 < th dose independent rect. 1 23
367 42.27 wind 1.0 4320 < th dose dependent rect. 10 1
368 42.27 temperature 20.0 270 < th dose dependent rect. 14 19
375 42.28 humidity 60.0 14400 > th dose dependent rect. 22 8
406 42.31 radiation 40.0 720 < th dose independent rect. 23 10
416 42.32 wind 9.0 43200 > th dose dependent sin 11 NA
447 42.34 wind 9.0 14400 > th dose independent rect. 4 8
455 42.35 temperature 20.0 720 > th dose independent sin 16 NA
478 42.37 wind 5.0 4320 > th dose dependent rect. 19 7
500 42.39 wind 5.0 4320 > th dose dependent rect. 19 2
502 42.39 atmosphere 995.0 90 > th dose dependent rect. 11 20
510 42.41 atmosphere 1005.0 14400 > th dose independent rect. 21 3
514 42.41 precipitation 0.1 720 < th dose independent rect. 21 22
516 42.41 atmosphere 1015.0 10 < th dose dependent rect. 16 13
522 42.41 precipitation 0.1 720 < th dose dependent rect. 21 22
524 42.42 temperature 20.0 270 > th dose independent sin 11 NA
530 42.42 wind 9.0 14400 > th dose dependent rect. 4 9
531 42.42 wind 9.0 43200 > th dose dependent rect. 20 12
561 42.45 atmosphere 995.0 43200 > th dose independent rect. 12 1
621 42.50 temperature 20.0 270 < th dose dependent sin 10 NA
627 42.51 temperature 20.0 270 < th dose independent sin 11 NA
629 42.51 wind 7.0 4320 < th dose independent rect. 19 7
630 42.51 wind 9.0 43200 < th dose independent rect. 18 9
642 42.52 wind 7.0 4320 > th dose independent rect. 19 7
662 42.53 wind 9.0 43200 > th dose dependent rect. 18 3
667 42.53 atmosphere 995.0 30 > th dose dependent rect. 9 23
698 42.56 temperature 20.0 720 < th dose independent sin 16 NA
700 42.56 temperature 20.0 720 < th dose independent rect. 18 7
707 42.56 temperature 20.0 10 > th dose independent rect. 16 13
709 42.56 temperature 25.0 720 < th dose dependent sin 14 NA
735 42.58 wind 9.0 43200 < th dose independent rect. 18 6
745 42.58 temperature 20.0 270 < th dose dependent no NA NA
746 42.58 humidity 70.0 14400 > th dose dependent rect. 4 2
752 42.58 temperature 20.0 270 < th dose dependent rect. 3 23
792 42.60 temperature 20.0 30 > th dose independent rect. 23 21
802 42.60 temperature 20.0 270 < th dose dependent rect. 1 23
806 42.61 wind 7.0 43200 > th dose independent rect. 6 1
856 42.63 wind 9.0 43200 > th dose independent rect. 20 13
874 42.63 temperature 25.0 90 < th dose dependent rect. 23 23
881 42.64 precipitation 0.1 720 < th dose independent rect. 21 7
889 42.64 precipitation 0.1 720 < th dose dependent rect. 21 7
918 42.65 wind 9.0 43200 > th dose dependent rect. 20 4
962 42.67 wind 9.0 43200 > th dose dependent rect. 20 7
980 42.68 atmosphere 995.0 43200 > th dose independent rect. 9 4