Os12g0542200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Extensin-like protein.
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Os12g0542200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Extensin-like protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = < th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 191.93 | 0.651 | 3.24 | 0.698 | 0.189 | -1.66 | 1 | -7.82 | -0.0279 | 14.4 | 6.696 | 4322 | 18.3 | 3.02 |
| 250.21 | 0.737 | 3.24 | 0.751 | 0.169 | -1.38 | 0.717 | -- | -0.02 | 14.3 | 7.792 | 4319 | 18.3 | 3.03 |
| 195.5 | 0.651 | 3.24 | 0.729 | 0.193 | -1.68 | -- | -7.75 | -0.0233 | 13.9 | 6.692 | 4322 | 18.3 | 3 |
| 240.51 | 0.722 | 3.24 | 0.554 | 0.196 | -1.52 | -- | -- | -0.0244 | 13.7 | 8.501 | 4319 | 18.4 | 3.06 |
| 197.73 | 0.655 | 3.24 | 0.718 | -- | -1.66 | -- | -7.73 | -0.0253 | -- | 6.605 | 4322 | 18.3 | 2.98 |
| 305.41 | 0.819 | 3.2 | 0.549 | 0.242 | -- | 0.923 | -- | -0.122 | 13.7 | -- | -- | -- | -- |
| 308.74 | 0.823 | 3.2 | 0.578 | 0.242 | -- | -- | -- | -0.118 | 13.2 | -- | -- | -- | -- |
| 241.44 | 0.724 | 3.25 | 0.417 | -- | -1.59 | -- | -- | -0.0197 | -- | 8.7 | 4319 | 18.5 | 3.03 |
| 221.54 | 0.693 | 3.24 | -- | 0.19 | -1.98 | -- | -- | -0.0302 | 13.2 | 8.5 | 4319 | 18.3 | 2.6 |
| 312.37 | 0.826 | 3.2 | 0.569 | -- | -- | -- | -- | -0.123 | -- | -- | -- | -- | -- |
| 317.55 | 0.834 | 3.21 | -- | 0.232 | -- | -- | -- | -0.182 | 13.1 | -- | -- | -- | -- |
| 221.8 | 0.694 | 3.24 | -- | -- | -2.17 | -- | -- | -0.00655 | -- | 8.5 | 4319 | 18.4 | 2.52 |
| 320.9 | 0.836 | 3.22 | -- | -- | -- | -- | -- | -0.186 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 192.86 | atmosphere | 995.0 | 14400 | < th | dose dependent | rect. | 14 | 1 |
| 20 | 193.48 | atmosphere | 995.0 | 14400 | < th | dose independent | rect. | 14 | 1 |
| 29 | 194.40 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 12 | 3 |
| 31 | 194.54 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 8 | 7 |
| 49 | 195.30 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 14 | 1 |
| 67 | 196.02 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 23 | 1 |
| 135 | 198.19 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 23 | 3 |
| 150 | 198.86 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 19 | 7 |
| 225 | 200.10 | wind | 7.0 | 4320 | < th | dose independent | rect. | 18 | 3 |
| 261 | 202.45 | wind | 7.0 | 4320 | > th | dose independent | rect. | 18 | 3 |
| 267 | 202.60 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 20 | 2 |
| 300 | 203.77 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 20 | 20 |
| 306 | 204.28 | wind | 7.0 | 4320 | < th | dose independent | rect. | 18 | 9 |
| 311 | 204.51 | wind | 9.0 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 322 | 204.66 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 323 | 204.76 | wind | 9.0 | 4320 | > th | dose dependent | rect. | 19 | 7 |
| 407 | 206.93 | atmosphere | 995.0 | 14400 | > th | dose independent | sin | 4 | NA |
| 417 | 207.25 | atmosphere | 995.0 | 14400 | < th | dose dependent | sin | 1 | NA |
| 461 | 208.27 | atmosphere | 995.0 | 14400 | < th | dose independent | sin | 4 | NA |
| 491 | 209.25 | atmosphere | 995.0 | 14400 | > th | dose independent | sin | 23 | NA |
| 553 | 210.01 | atmosphere | 995.0 | 14400 | < th | dose independent | sin | 23 | NA |
| 581 | 210.45 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 23 | 8 |
| 594 | 210.80 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 20 | 1 |
| 624 | 211.36 | wind | 5.0 | 1440 | > th | dose dependent | rect. | 8 | 1 |
| 637 | 211.67 | wind | 5.0 | 1440 | < th | dose independent | rect. | 7 | 2 |
| 669 | 212.25 | atmosphere | 995.0 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 674 | 212.25 | atmosphere | 995.0 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 688 | 212.34 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 2 | 5 |
| 718 | 212.51 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 22 | 1 |
| 787 | 212.73 | atmosphere | 995.0 | 14400 | > th | dose independent | no | NA | NA |
| 792 | 212.73 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 10 | 23 |
| 793 | 212.73 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 12 | 23 |
| 794 | 212.73 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 14 | 23 |
| 816 | 212.77 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 12 | 21 |
| 825 | 212.89 | wind | 5.0 | 1440 | > th | dose independent | rect. | 7 | 2 |
| 910 | 213.64 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 14 | 21 |
| 986 | 213.88 | atmosphere | 995.0 | 14400 | < th | dose independent | no | NA | NA |