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Os12g0541600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, unclassifiable transcript.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.04 (0.0169) R2 : 0.709
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.4 (0.0421) R2dC : 0.714 R2C : 0.709
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0178 (0.0355) R2dN8 : 0.000208 R2N8 : -0.00464
σ : 0.318
deviance : 46.17
__
_____
C
peak time of C : 8.94
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
41.25 0.302 9.03 -0.0159 1.34 0.201 -0.74 0.377 0.0542 9.26 24.8 261 -- --
41.7 0.301 9.01 0.107 1.33 0.226 -0.736 -- 0.0986 9.3 24.78 256 -- --
43.19 0.306 9.03 -0.0313 1.35 0.205 -- 0.341 0.059 9.28 24.8 256 -- --
43.34 0.307 9.02 0.0712 1.34 0.237 -- -- 0.0878 9.41 25.24 205 -- --
115.24 0.5 9.01 0.572 -- 1.02 -- -1.04 0.306 -- 25.8 702 -- --
44.41 0.312 9.04 0.0277 1.4 -- -0.718 -- -0.017 8.95 -- -- -- --
46.17 0.318 9.04 0.00314 1.4 -- -- -- -0.0175 8.94 -- -- -- --
116.41 0.503 9 0.275 -- 0.947 -- -- 0.326 -- 25.61 673 -- --
43.47 0.307 9.02 -- 1.34 0.226 -- -- 0.0732 9.38 25.25 205 -- --
158.93 0.589 9.08 0.00229 -- -- -- -- -0.00812 -- -- -- -- --
46.17 0.318 9.04 -- 1.4 -- -- -- -0.0178 8.94 -- -- -- --
118.36 0.507 9.01 -- -- 0.9 -- -- 0.276 -- 25.7 673 -- --
158.93 0.588 9.08 -- -- -- -- -- -0.00838 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 37.18 wind 5.0 90 < th dose independent rect. 8 20
3 37.56 temperature 10.0 270 > th dose dependent rect. 21 14
5 37.72 wind 9.0 90 < th dose dependent rect. 8 20
6 37.82 temperature 20.0 90 > th dose dependent rect. 22 16
10 37.86 wind 5.0 270 < th dose independent rect. 6 21
11 37.88 temperature 30.0 270 < th dose dependent rect. 3 2
14 37.97 wind 9.0 270 < th dose dependent rect. 6 21
24 38.12 humidity 50.0 270 > th dose independent rect. 6 21
34 38.23 temperature 30.0 270 < th dose dependent rect. 1 6
46 38.30 temperature 30.0 90 < th dose dependent rect. 3 6
48 38.31 precipitation 0.1 270 < th dose independent rect. 3 2
50 38.31 precipitation 0.1 270 < th dose dependent rect. 3 2
52 38.32 wind 5.0 270 < th dose independent rect. 3 2
53 38.32 humidity 70.0 90 > th dose independent rect. 17 11
55 38.34 wind 9.0 270 < th dose independent rect. 5 22
59 38.36 atmosphere 1000.0 270 > th dose independent rect. 11 10
77 38.43 temperature 10.0 90 > th dose dependent rect. 8 6
94 38.49 wind 5.0 90 < th dose independent rect. 3 5
97 38.50 humidity 50.0 30 > th dose independent rect. 8 20
98 38.51 temperature 15.0 10 > th dose dependent rect. 8 6
100 38.52 temperature 10.0 270 > th dose dependent rect. 6 6
104 38.54 radiation 1.0 270 < th dose dependent rect. 3 3
111 38.55 temperature 10.0 270 > th dose independent rect. 4 1
113 38.55 temperature 30.0 270 < th dose independent rect. 4 1
114 38.55 humidity 50.0 270 > th dose independent rect. 4 1
117 38.55 atmosphere 995.0 270 > th dose independent rect. 4 1
118 38.55 atmosphere 1010.0 270 < th dose independent rect. 4 1
120 38.55 radiation 20.0 270 < th dose independent rect. 4 1
137 38.55 temperature 10.0 270 > th dose independent rect. 5 22
142 38.56 wind 9.0 270 < th dose dependent rect. 4 1
143 38.56 radiation 30.0 270 < th dose dependent rect. 3 2
149 38.57 temperature 10.0 30 > th dose dependent rect. 8 20
155 38.59 radiation 1.0 270 < th dose independent rect. 3 2
157 38.59 radiation 1.0 270 < th dose dependent rect. 4 1
179 38.63 precipitation 0.1 90 < th dose independent rect. 3 5
180 38.63 precipitation 0.1 90 < th dose dependent rect. 3 5
185 38.65 temperature 25.0 270 > th dose independent rect. 21 15
203 38.69 temperature 30.0 90 < th dose independent rect. 17 11
233 38.75 temperature 10.0 30 > th dose independent rect. 4 4
235 38.75 temperature 30.0 30 < th dose independent rect. 4 4
236 38.75 humidity 50.0 30 > th dose independent rect. 4 4
238 38.75 atmosphere 995.0 30 > th dose independent rect. 4 4
239 38.75 atmosphere 1015.0 30 < th dose independent rect. 4 4
240 38.75 temperature 10.0 30 > th dose independent rect. 8 20
241 38.75 humidity 50.0 270 > th dose dependent rect. 4 1
244 38.75 radiation 1.0 270 < th dose dependent rect. 3 10
250 38.77 wind 9.0 90 < th dose dependent rect. 3 5
262 38.79 temperature 30.0 90 < th dose dependent rect. 3 8
266 38.80 precipitation 0.1 270 < th dose independent rect. 5 22
268 38.80 precipitation 0.1 270 < th dose dependent rect. 5 22
272 38.81 atmosphere 1015.0 90 < th dose independent rect. 8 19
279 38.82 radiation 40.0 90 < th dose independent rect. 3 5
311 38.85 humidity 50.0 90 > th dose dependent rect. 17 10
357 38.93 precipitation 0.1 30 < th dose independent rect. 8 20
358 38.93 radiation 30.0 270 < th dose dependent rect. 1 9
359 38.93 precipitation 0.1 30 < th dose dependent rect. 8 20
365 38.95 temperature 25.0 30 > th dose independent rect. 8 6
369 38.95 atmosphere 1015.0 270 < th dose dependent rect. 4 1
376 38.97 radiation 1.0 270 < th dose independent rect. 3 6
377 38.97 wind 5.0 270 < th dose independent rect. 6 7
378 38.97 temperature 25.0 270 < th dose independent rect. 1 7
384 38.98 atmosphere 1000.0 30 > th dose independent rect. 4 18
413 39.02 radiation 1.0 30 > th dose independent rect. 16 16
416 39.02 wind 9.0 270 < th dose dependent rect. 6 8
417 39.02 radiation 1.0 30 < th dose dependent rect. 16 12
427 39.04 atmosphere 995.0 270 > th dose independent rect. 13 17
450 39.05 radiation 1.0 270 < th dose independent rect. 3 10
468 39.08 wind 9.0 1440 < th dose independent rect. 5 4
469 39.08 temperature 10.0 1440 > th dose independent rect. 5 4
472 39.08 humidity 50.0 1440 > th dose independent rect. 5 4
474 39.08 atmosphere 995.0 1440 > th dose independent rect. 5 4
475 39.08 atmosphere 1015.0 1440 < th dose independent rect. 5 4
482 39.08 temperature 10.0 1440 > th dose independent rect. 9 20
491 39.09 precipitation 0.1 270 < th dose independent rect. 1 6
492 39.09 wind 5.0 90 < th dose independent rect. 8 7
497 39.09 precipitation 0.1 270 < th dose dependent rect. 1 6
504 39.10 wind 9.0 90 < th dose dependent rect. 8 7
515 39.12 radiation 1.0 90 < th dose independent rect. 16 12
519 39.12 radiation 1.0 30 < th dose dependent sin 12 NA
526 39.13 radiation 1.0 30 > th dose independent rect. 14 18
535 39.14 wind 3.0 270 > th dose independent rect. 11 10
540 39.14 temperature 20.0 270 > th dose dependent rect. 9 1
550 39.15 wind 7.0 270 < th dose independent rect. 21 14
577 39.17 radiation 1.0 30 < th dose independent sin 12 NA
606 39.20 atmosphere 1015.0 30 < th dose dependent rect. 4 4
620 39.22 humidity 50.0 270 > th dose independent rect. 15 11
647 39.24 temperature 10.0 270 > th dose independent rect. 1 6
650 39.24 humidity 50.0 270 > th dose independent rect. 1 6
652 39.24 atmosphere 995.0 270 > th dose independent rect. 1 6
653 39.24 atmosphere 1015.0 270 < th dose independent rect. 1 6
654 39.24 radiation 30.0 270 < th dose independent rect. 1 6
661 39.24 atmosphere 1015.0 270 < th dose independent rect. 6 20
678 39.26 radiation 1.0 30 > th dose independent sin 12 NA
687 39.26 atmosphere 1015.0 10 < th dose dependent rect. 8 6
691 39.26 temperature 30.0 90 < th dose dependent rect. 3 14
708 39.28 atmosphere 995.0 30 > th dose independent rect. 8 20
709 39.28 radiation 1.0 270 > th dose dependent rect. 8 3
723 39.29 temperature 15.0 90 > th dose independent rect. 14 18
726 39.29 atmosphere 995.0 270 > th dose dependent rect. 12 9
771 39.32 radiation 30.0 270 < th dose dependent rect. 1 12
775 39.33 humidity 50.0 270 > th dose independent rect. 21 14
785 39.34 radiation 40.0 10 < th dose independent rect. 4 18
786 39.34 precipitation 0.1 90 < th dose independent rect. 14 18
795 39.34 precipitation 0.1 90 < th dose dependent rect. 14 18
800 39.35 wind 1.0 270 > th dose independent rect. 3 2
813 39.36 temperature 10.0 30 > th dose dependent rect. 22 6
814 39.36 wind 9.0 90 < th dose dependent rect. 17 10
823 39.37 radiation 1.0 90 > th dose independent rect. 8 6
829 39.38 humidity 50.0 270 > th dose independent rect. 6 7
830 39.38 atmosphere 1000.0 10 > th dose independent rect. 14 8
831 39.38 atmosphere 1000.0 10 > th dose independent rect. 12 10
852 39.40 temperature 10.0 270 > th dose independent rect. 11 10
853 39.40 temperature 10.0 270 > th dose independent rect. 21 14
854 39.40 atmosphere 995.0 270 > th dose independent rect. 21 14
891 39.42 temperature 10.0 90 > th dose independent rect. 8 6
894 39.42 atmosphere 995.0 90 > th dose independent rect. 8 6
896 39.42 atmosphere 1015.0 90 < th dose independent rect. 8 6
897 39.42 radiation 1.0 270 > th dose independent rect. 6 7
901 39.42 temperature 20.0 90 > th dose dependent sin 6 NA
911 39.43 precipitation 0.1 90 < th dose independent rect. 8 6
916 39.43 precipitation 0.1 270 < th dose independent rect. 11 10
919 39.43 precipitation 0.1 90 < th dose dependent rect. 8 6
924 39.43 precipitation 0.1 270 < th dose dependent rect. 11 10
928 39.44 precipitation 0.1 270 < th dose independent rect. 6 7
938 39.44 precipitation 0.1 270 < th dose dependent rect. 6 7
945 39.45 temperature 10.0 270 > th dose independent rect. 6 7
946 39.45 atmosphere 995.0 270 > th dose independent rect. 6 7
947 39.45 atmosphere 1015.0 270 < th dose independent rect. 6 7
953 39.45 precipitation 0.1 10 < th dose independent rect. 14 18
967 39.45 precipitation 0.1 10 < th dose dependent rect. 14 18
970 39.46 humidity 50.0 90 > th dose independent rect. 8 6
971 39.46 radiation 1.0 10 > th dose independent rect. 8 6
1000 39.48 wind 1.0 90 > th dose independent rect. 8 6