Os12g0541400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Prefoldin domain containing protein.
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Os12g0541400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Prefoldin domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 13.92 | 0.175 | 10.4 | -0.186 | 0.728 | -0.313 | -0.000768 | 0.59 | -0.0399 | 8.39 | 24.8 | 4392 | -- | -- |
| 14.3 | 0.176 | 10.3 | -0.0317 | 0.728 | -0.248 | 0.0458 | -- | 0.00163 | 8.4 | 24.8 | 5676 | -- | -- |
| 13.92 | 0.174 | 10.4 | -0.186 | 0.728 | -0.313 | -- | 0.59 | -0.0399 | 8.39 | 24.8 | 4392 | -- | -- |
| 14.19 | 0.175 | 10.3 | -0.0184 | 0.721 | -0.277 | -- | -- | 0.00364 | 8.37 | 24.5 | 4358 | -- | -- |
| 43.19 | 0.306 | 10.4 | -0.19 | -- | -0.293 | -- | 0.48 | -0.0501 | -- | 24.1 | 4413 | -- | -- |
| 16.21 | 0.189 | 10.3 | 0.0899 | 0.727 | -- | -0.0138 | -- | 0.0693 | 8.28 | -- | -- | -- | -- |
| 16.21 | 0.189 | 10.3 | 0.0895 | 0.727 | -- | -- | -- | 0.0693 | 8.28 | -- | -- | -- | -- |
| 42.22 | 0.304 | 10.4 | 0.0175 | -- | -0.219 | -- | -- | 0.00719 | -- | 22.5 | 5857 | -- | -- |
| 14.19 | 0.175 | 10.3 | -- | 0.725 | -0.278 | -- | -- | 0.00972 | 8.39 | 24.8 | 4391 | -- | -- |
| 45.5 | 0.315 | 10.3 | 0.0943 | -- | -- | -- | -- | 0.0773 | -- | -- | -- | -- | -- |
| 16.42 | 0.19 | 10.3 | -- | 0.728 | -- | -- | -- | 0.0593 | 8.28 | -- | -- | -- | -- |
| 42.23 | 0.304 | 10.4 | -- | -- | -0.222 | -- | -- | 0.00461 | -- | 22.5 | 5857 | -- | -- |
| 45.73 | 0.316 | 10.3 | -- | -- | -- | -- | -- | 0.0668 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 13.44 | temperature | 10 | 270 | > th | dose dependent | rect. | 16 | 15 |
| 2 | 13.45 | temperature | 25 | 10 | > th | dose independent | rect. | 1 | 8 |
| 5 | 13.51 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 19 |
| 9 | 13.56 | temperature | 20 | 270 | > th | dose dependent | rect. | 2 | 5 |
| 10 | 13.57 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 12 |
| 35 | 13.70 | temperature | 20 | 10 | > th | dose dependent | rect. | 19 | 14 |
| 38 | 13.71 | temperature | 20 | 270 | > th | dose dependent | rect. | 3 | 3 |
| 41 | 13.71 | temperature | 20 | 30 | > th | dose dependent | rect. | 17 | 16 |
| 55 | 13.75 | temperature | 30 | 4320 | < th | dose dependent | rect. | 4 | 1 |
| 57 | 13.76 | temperature | 30 | 720 | < th | dose independent | rect. | 16 | 1 |
| 60 | 13.76 | temperature | 10 | 4320 | > th | dose dependent | rect. | 4 | 1 |
| 68 | 13.77 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 8 |
| 74 | 13.78 | temperature | 20 | 720 | > th | dose dependent | sin | 12 | NA |
| 78 | 13.80 | temperature | 25 | 4320 | < th | dose independent | rect. | 23 | 15 |
| 79 | 13.80 | temperature | 25 | 1440 | < th | dose independent | rect. | 14 | 16 |
| 91 | 13.81 | temperature | 25 | 4320 | > th | dose independent | rect. | 23 | 15 |
| 178 | 13.85 | temperature | 25 | 1440 | > th | dose independent | rect. | 14 | 17 |
| 184 | 13.85 | temperature | 25 | 1440 | > th | dose independent | rect. | 10 | 21 |
| 185 | 13.85 | temperature | 25 | 1440 | < th | dose independent | rect. | 10 | 21 |
| 199 | 13.86 | temperature | 25 | 4320 | < th | dose independent | sin | 6 | NA |
| 207 | 13.86 | humidity | 50 | 270 | > th | dose independent | rect. | 5 | 23 |
| 228 | 13.87 | temperature | 25 | 4320 | > th | dose independent | sin | 6 | NA |
| 230 | 13.87 | temperature | 25 | 1440 | < th | dose independent | sin | 14 | NA |
| 256 | 13.87 | temperature | 10 | 4320 | > th | dose dependent | rect. | 1 | 1 |
| 257 | 13.87 | temperature | 30 | 4320 | < th | dose dependent | rect. | 1 | 1 |
| 258 | 13.87 | radiation | 1 | 43200 | < th | dose dependent | rect. | 23 | 1 |
| 325 | 13.89 | temperature | 25 | 10 | > th | dose independent | rect. | 17 | 16 |
| 410 | 13.91 | temperature | 25 | 1440 | > th | dose independent | sin | 14 | NA |
| 434 | 13.91 | temperature | 25 | 4320 | < th | dose independent | rect. | 23 | 21 |
| 481 | 13.92 | temperature | 25 | 4320 | > th | dose independent | rect. | 23 | 21 |
| 579 | 13.94 | temperature | 25 | 4320 | < th | dose independent | no | NA | NA |
| 642 | 13.95 | temperature | 25 | 4320 | > th | dose independent | no | NA | NA |
| 793 | 13.97 | temperature | 25 | 4320 | > th | dose independent | rect. | 3 | 23 |
| 797 | 13.97 | temperature | 25 | 4320 | < th | dose independent | rect. | 3 | 23 |
| 829 | 13.98 | temperature | 25 | 10 | > th | dose independent | rect. | 19 | 14 |