Os12g0541200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os12g0541200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 60.65 | 0.366 | 11.1 | -1.04 | 0.569 | 0.119 | 0.351 | -8.31 | -0.177 | 4.89 | 30.04 | 1683 | -- | -- |
| 63.41 | 0.371 | 10.9 | 0.439 | 0.647 | -0.823 | 0.534 | -- | 0.139 | 4.87 | 28.8 | 4530 | -- | -- |
| 60.89 | 0.363 | 11.1 | -1.03 | 0.556 | 0.12 | -- | -8.54 | -0.179 | 4.81 | 30.02 | 1736 | -- | -- |
| 62.63 | 0.369 | 10.9 | 0.434 | 0.569 | -0.875 | -- | -- | 0.0761 | 4.88 | 28.4 | 4560 | -- | -- |
| 74.76 | 0.403 | 11.1 | -0.815 | -- | -0.0084 | -- | -8.35 | -0.135 | -- | 30.3 | 2090 | -- | -- |
| 88.51 | 0.441 | 10.9 | 0.141 | 0.553 | -- | 0.352 | -- | 0.0132 | 5.11 | -- | -- | -- | -- |
| 88.81 | 0.441 | 10.9 | 0.14 | 0.555 | -- | -- | -- | 0.0115 | 5.04 | -- | -- | -- | -- |
| 68.71 | 0.386 | 10.9 | 0.4 | -- | -0.726 | -- | -- | 0.188 | -- | 26.7 | 305 | -- | -- |
| 66.64 | 0.38 | 10.9 | -- | 0.584 | -0.773 | -- | -- | 0.0346 | 4.73 | 28.7 | 4530 | -- | -- |
| 104.96 | 0.479 | 10.9 | 0.16 | -- | -- | -- | -- | 0.0256 | -- | -- | -- | -- | -- |
| 89.33 | 0.442 | 10.9 | -- | 0.557 | -- | -- | -- | -0.00415 | 5.03 | -- | -- | -- | -- |
| 71.21 | 0.393 | 10.9 | -- | -- | -0.693 | -- | -- | 0.124 | -- | 26.77 | 270 | -- | -- |
| 105.64 | 0.48 | 10.9 | -- | -- | -- | -- | -- | 0.00784 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 60.00 | temperature | 25 | 4320 | > th | dose dependent | rect. | 24 | 9 |
| 2 | 60.00 | temperature | 25 | 4320 | > th | dose dependent | rect. | 23 | 11 |
| 5 | 60.18 | temperature | 25 | 720 | > th | dose dependent | sin | 8 | NA |
| 8 | 60.28 | temperature | 25 | 4320 | > th | dose dependent | rect. | 4 | 3 |
| 10 | 60.34 | temperature | 25 | 720 | > th | dose dependent | rect. | 20 | 15 |
| 15 | 60.46 | temperature | 25 | 4320 | > th | dose dependent | rect. | 6 | 1 |
| 21 | 60.57 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 5 |
| 28 | 60.60 | temperature | 30 | 1440 | < th | dose independent | rect. | 3 | 11 |
| 29 | 60.61 | temperature | 30 | 1440 | > th | dose independent | rect. | 10 | 1 |
| 30 | 60.61 | temperature | 30 | 1440 | < th | dose independent | rect. | 5 | 9 |
| 42 | 60.64 | temperature | 30 | 1440 | < th | dose independent | rect. | 10 | 1 |
| 59 | 60.66 | temperature | 30 | 1440 | > th | dose independent | rect. | 10 | 4 |
| 61 | 60.66 | temperature | 30 | 1440 | < th | dose independent | rect. | 19 | 19 |
| 79 | 60.71 | temperature | 25 | 4320 | > th | dose dependent | sin | 8 | NA |
| 82 | 60.73 | temperature | 30 | 1440 | > th | dose independent | sin | 6 | NA |
| 93 | 60.80 | temperature | 30 | 1440 | < th | dose independent | sin | 6 | NA |
| 186 | 61.09 | temperature | 25 | 4320 | > th | dose independent | rect. | 6 | 1 |
| 266 | 61.26 | temperature | 30 | 1440 | > th | dose dependent | rect. | 12 | 1 |
| 269 | 61.27 | temperature | 25 | 4320 | > th | dose independent | rect. | 1 | 8 |
| 273 | 61.30 | temperature | 25 | 4320 | < th | dose independent | rect. | 6 | 1 |
| 329 | 61.45 | temperature | 30 | 1440 | > th | dose independent | rect. | 16 | 23 |
| 371 | 61.50 | temperature | 30 | 1440 | < th | dose independent | rect. | 16 | 22 |
| 437 | 61.57 | temperature | 30 | 4320 | < th | dose dependent | rect. | 17 | 2 |
| 444 | 61.59 | temperature | 25 | 4320 | < th | dose independent | rect. | 3 | 5 |
| 465 | 61.61 | temperature | 25 | 4320 | > th | dose dependent | rect. | 23 | 22 |
| 490 | 61.64 | temperature | 25 | 4320 | > th | dose dependent | rect. | 6 | 22 |
| 505 | 61.65 | temperature | 25 | 4320 | > th | dose dependent | no | NA | NA |
| 523 | 61.66 | temperature | 25 | 4320 | > th | dose dependent | rect. | 3 | 23 |
| 605 | 61.70 | temperature | 30 | 1440 | < th | dose independent | rect. | 19 | 23 |
| 699 | 61.77 | temperature | 15 | 4320 | > th | dose dependent | rect. | 8 | 13 |
| 703 | 61.78 | temperature | 15 | 4320 | > th | dose dependent | rect. | 17 | 2 |
| 813 | 61.85 | temperature | 30 | 1440 | > th | dose independent | rect. | 16 | 1 |
| 822 | 61.85 | temperature | 25 | 4320 | > th | dose dependent | rect. | 6 | 15 |
| 895 | 61.91 | temperature | 30 | 1440 | < th | dose independent | rect. | 16 | 1 |