Os12g0541000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Lumazine-binding protein family protein.
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Os12g0541000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Lumazine-binding protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 36.67 | 0.285 | 13 | 0.372 | 0.841 | 0.329 | 0.21 | -1.94 | -0.219 | 16.7 | 0.3599 | 1456 | -- | -- |
| 40.48 | 0.296 | 13 | 0.316 | 0.814 | 0.471 | 0.255 | -- | -0.197 | 16.8 | 0.03973 | 23154 | -- | -- |
| 36.78 | 0.282 | 13 | 0.372 | 0.841 | 0.336 | -- | -1.93 | -0.218 | 16.7 | 0.3576 | 1458 | -- | -- |
| 40.59 | 0.297 | 13 | 0.316 | 0.815 | 0.472 | -- | -- | -0.197 | 16.8 | 0.0007737 | 23069 | -- | -- |
| 73.98 | 0.401 | 13 | 0.323 | -- | 0.402 | -- | -1.76 | -0.219 | -- | 0.4199 | 1427 | -- | -- |
| 44.48 | 0.313 | 13 | -6.87e-05 | 0.831 | -- | 0.261 | -- | -0.338 | 16.8 | -- | -- | -- | -- |
| 44.65 | 0.313 | 13 | 0.000817 | 0.833 | -- | -- | -- | -0.337 | 16.9 | -- | -- | -- | -- |
| 73.58 | 0.4 | 13 | 0.3 | -- | 0.857 | -- | -- | -0.223 | -- | 0.03997 | 1418 | -- | -- |
| 43.48 | 0.307 | 13 | -- | 0.816 | 0.465 | -- | -- | -0.198 | 16.8 | 0.07878 | 23260 | -- | -- |
| 81.24 | 0.421 | 13 | -0.0301 | -- | -- | -- | -- | -0.359 | -- | -- | -- | -- | -- |
| 44.65 | 0.313 | 13 | -- | 0.832 | -- | -- | -- | -0.337 | 16.9 | -- | -- | -- | -- |
| 74.41 | 0.402 | 13 | -- | -- | 0.707 | -- | -- | -0.291 | -- | 0.03095 | 1410 | -- | -- |
| 81.26 | 0.421 | 13 | -- | -- | -- | -- | -- | -0.355 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 33.66 | temperature | 25 | 720 | < th | dose independent | sin | 15 | NA |
| 3 | 33.87 | temperature | 25 | 720 | < th | dose independent | rect. | 15 | 11 |
| 4 | 33.89 | temperature | 25 | 720 | < th | dose independent | rect. | 15 | 13 |
| 40 | 34.89 | temperature | 25 | 720 | > th | dose independent | rect. | 17 | 6 |
| 93 | 35.63 | temperature | 25 | 720 | > th | dose independent | sin | 15 | NA |
| 124 | 35.96 | radiation | 1 | 1440 | < th | dose dependent | rect. | 13 | 17 |
| 140 | 36.10 | temperature | 20 | 10 | > th | dose dependent | rect. | 17 | 14 |
| 154 | 36.21 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 14 |
| 166 | 36.26 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 9 |
| 190 | 36.37 | radiation | 1 | 1440 | < th | dose dependent | sin | 14 | NA |
| 203 | 36.45 | radiation | 1 | 1440 | < th | dose independent | rect. | 13 | 17 |
| 220 | 36.52 | radiation | 1 | 1440 | > th | dose independent | rect. | 13 | 17 |
| 235 | 36.58 | wind | 1 | 43200 | > th | dose independent | rect. | 9 | 2 |
| 237 | 36.59 | temperature | 25 | 720 | > th | dose independent | rect. | 11 | 15 |
| 241 | 36.59 | radiation | 1 | 1440 | < th | dose dependent | rect. | 13 | 12 |
| 245 | 36.60 | temperature | 20 | 10 | > th | dose dependent | sin | 11 | NA |
| 248 | 36.61 | radiation | 1 | 1440 | < th | dose dependent | rect. | 13 | 6 |
| 249 | 36.61 | radiation | 1 | 1440 | < th | dose dependent | rect. | 13 | 8 |
| 266 | 36.64 | wind | 1 | 14400 | > th | dose dependent | rect. | 10 | 5 |
| 283 | 36.68 | wind | 9 | 14400 | < th | dose dependent | rect. | 10 | 5 |
| 358 | 36.82 | radiation | 1 | 1440 | < th | dose dependent | no | NA | NA |
| 360 | 36.82 | radiation | 1 | 1440 | < th | dose dependent | rect. | 24 | 19 |
| 363 | 36.82 | radiation | 1 | 1440 | < th | dose dependent | rect. | 4 | 21 |
| 371 | 36.82 | radiation | 1 | 1440 | < th | dose dependent | rect. | 2 | 23 |
| 378 | 36.83 | radiation | 1 | 1440 | < th | dose dependent | rect. | 4 | 15 |
| 404 | 36.84 | temperature | 25 | 720 | > th | dose dependent | sin | 12 | NA |
| 468 | 36.93 | radiation | 1 | 1440 | < th | dose independent | sin | 15 | NA |
| 475 | 36.94 | temperature | 25 | 10 | < th | dose dependent | rect. | 16 | 16 |
| 509 | 36.99 | radiation | 1 | 1440 | < th | dose dependent | rect. | 16 | 23 |
| 511 | 37.00 | wind | 5 | 14400 | < th | dose dependent | rect. | 10 | 2 |
| 517 | 37.01 | temperature | 25 | 10 | < th | dose dependent | sin | 10 | NA |
| 540 | 37.03 | radiation | 1 | 1440 | > th | dose independent | sin | 15 | NA |
| 570 | 37.09 | radiation | 1 | 1440 | < th | dose independent | rect. | 13 | 14 |
| 574 | 37.09 | radiation | 1 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 578 | 37.10 | radiation | 1 | 1440 | < th | dose independent | rect. | 13 | 12 |
| 591 | 37.12 | radiation | 1 | 1440 | < th | dose independent | rect. | 13 | 6 |
| 593 | 37.12 | radiation | 1 | 1440 | < th | dose independent | rect. | 13 | 8 |
| 594 | 37.12 | radiation | 1 | 1440 | < th | dose independent | rect. | 13 | 10 |
| 598 | 37.12 | temperature | 25 | 720 | > th | dose dependent | rect. | 20 | 3 |
| 645 | 37.19 | radiation | 1 | 1440 | > th | dose independent | rect. | 13 | 6 |
| 684 | 37.21 | radiation | 1 | 1440 | > th | dose independent | rect. | 16 | 1 |
| 685 | 37.21 | wind | 1 | 43200 | < th | dose independent | rect. | 9 | 2 |
| 703 | 37.22 | radiation | 1 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 742 | 37.24 | radiation | 1 | 1440 | < th | dose independent | rect. | 10 | 15 |
| 751 | 37.24 | humidity | 90 | 14400 | < th | dose dependent | rect. | 3 | 1 |
| 766 | 37.25 | radiation | 1 | 1440 | < th | dose independent | rect. | 10 | 9 |
| 850 | 37.31 | radiation | 1 | 1440 | > th | dose independent | rect. | 10 | 9 |
| 885 | 37.34 | wind | 7 | 14400 | < th | dose independent | rect. | 12 | 3 |
| 899 | 37.35 | wind | 1 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 903 | 37.36 | wind | 7 | 14400 | > th | dose independent | rect. | 14 | 1 |
| 923 | 37.38 | wind | 7 | 14400 | > th | dose independent | rect. | 11 | 4 |
| 929 | 37.38 | wind | 7 | 14400 | > th | dose dependent | rect. | 5 | 11 |
| 936 | 37.39 | wind | 7 | 14400 | > th | dose dependent | rect. | 9 | 7 |
| 972 | 37.42 | wind | 7 | 14400 | < th | dose independent | rect. | 14 | 1 |