Os12g0540200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, putative npRNA.
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Os12g0540200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, putative npRNA.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 24.56 | 0.233 | 9.1 | 0.0987 | 0.104 | -0.742 | 0.059 | -1.04 | 0.22 | 17.1 | 19.87 | 3934 | -- | -- |
| 24.54 | 0.231 | 9.14 | 0.0619 | 0.0902 | -0.446 | 0.0135 | -- | 0.179 | 16.7 | 21.8 | 2310 | -- | -- |
| 24.56 | 0.231 | 9.1 | 0.0999 | 0.102 | -0.738 | -- | -1.02 | 0.219 | 16.7 | 19.87 | 3833 | -- | -- |
| 24.53 | 0.231 | 9.14 | 0.0546 | 0.0954 | -0.449 | -- | -- | 0.179 | 16.2 | 21.79 | 2310 | -- | -- |
| 24.11 | 0.229 | 9.12 | 0.147 | -- | -0.5 | -- | -0.583 | 0.202 | -- | 21.4 | 1960 | -- | -- |
| 30.48 | 0.259 | 9.11 | 0.274 | 0.0761 | -- | 0.296 | -- | 0.322 | 19.6 | -- | -- | -- | -- |
| 30.63 | 0.259 | 9.11 | 0.268 | 0.0891 | -- | -- | -- | 0.324 | 17.8 | -- | -- | -- | -- |
| 24.97 | 0.233 | 9.14 | 0.0641 | -- | -0.44 | -- | -- | 0.182 | -- | 21.7 | 2127 | -- | -- |
| 24.59 | 0.231 | 9.14 | -- | 0.0953 | -0.468 | -- | -- | 0.169 | 16.2 | 21.78 | 2315 | -- | -- |
| 31.04 | 0.26 | 9.11 | 0.266 | -- | -- | -- | -- | 0.321 | -- | -- | -- | -- | -- |
| 32.53 | 0.267 | 9.11 | -- | 0.085 | -- | -- | -- | 0.294 | 17.9 | -- | -- | -- | -- |
| 25.06 | 0.233 | 9.14 | -- | -- | -0.461 | -- | -- | 0.169 | -- | 21.73 | 2142 | -- | -- |
| 32.9 | 0.268 | 9.11 | -- | -- | -- | -- | -- | 0.292 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 22.48 | humidity | 90 | 14400 | < th | dose dependent | rect. | 2 | 1 |
| 2 | 22.63 | wind | 3 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 4 | 22.65 | wind | 3 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 6 | 22.65 | wind | 3 | 14400 | < th | dose independent | rect. | 1 | 13 |
| 11 | 22.76 | wind | 3 | 14400 | > th | dose independent | rect. | 1 | 13 |
| 15 | 22.78 | wind | 3 | 14400 | < th | dose dependent | rect. | 4 | 10 |
| 16 | 22.79 | wind | 3 | 14400 | < th | dose dependent | rect. | 5 | 8 |
| 20 | 22.84 | wind | 3 | 14400 | < th | dose independent | sin | 5 | NA |
| 46 | 22.97 | wind | 3 | 14400 | > th | dose independent | sin | 5 | NA |
| 61 | 23.02 | wind | 3 | 14400 | < th | dose dependent | rect. | 5 | 2 |
| 69 | 23.03 | wind | 3 | 14400 | < th | dose dependent | rect. | 21 | 17 |
| 75 | 23.04 | wind | 3 | 14400 | < th | dose dependent | rect. | 1 | 13 |
| 84 | 23.08 | wind | 3 | 14400 | < th | dose dependent | sin | 4 | NA |
| 85 | 23.08 | wind | 3 | 14400 | < th | dose dependent | rect. | 5 | 4 |
| 127 | 23.17 | wind | 3 | 14400 | < th | dose independent | rect. | 1 | 7 |
| 152 | 23.21 | wind | 3 | 14400 | < th | dose independent | rect. | 18 | 14 |
| 168 | 23.23 | wind | 3 | 14400 | < th | dose dependent | rect. | 12 | 1 |
| 186 | 23.27 | wind | 3 | 14400 | > th | dose independent | rect. | 1 | 7 |
| 206 | 23.31 | wind | 1 | 14400 | > th | dose independent | rect. | 11 | 2 |
| 209 | 23.31 | wind | 9 | 14400 | > th | dose dependent | rect. | 12 | 1 |
| 218 | 23.33 | wind | 3 | 14400 | > th | dose independent | rect. | 18 | 14 |
| 227 | 23.34 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 257 | 23.38 | wind | 1 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 259 | 23.39 | wind | 1 | 14400 | < th | dose independent | rect. | 11 | 2 |
| 296 | 23.44 | wind | 1 | 14400 | < th | dose dependent | rect. | 10 | 3 |
| 312 | 23.46 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 354 | 23.51 | humidity | 80 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 369 | 23.53 | wind | 3 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 400 | 23.57 | wind | 9 | 14400 | < th | dose independent | rect. | 6 | 7 |
| 424 | 23.60 | humidity | 80 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 430 | 23.61 | wind | 9 | 14400 | > th | dose independent | rect. | 10 | 2 |
| 437 | 23.62 | wind | 3 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 438 | 23.62 | wind | 9 | 14400 | < th | dose independent | rect. | 10 | 3 |
| 446 | 23.63 | wind | 3 | 14400 | < th | dose dependent | rect. | 1 | 1 |
| 460 | 23.65 | wind | 9 | 14400 | > th | dose independent | rect. | 6 | 7 |
| 461 | 23.65 | wind | 3 | 14400 | < th | dose dependent | rect. | 22 | 4 |
| 471 | 23.67 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 3 |
| 479 | 23.68 | wind | 1 | 14400 | < th | dose independent | rect. | 9 | 4 |
| 536 | 23.75 | wind | 1 | 14400 | > th | dose independent | rect. | 9 | 4 |
| 547 | 23.76 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 9 |
| 588 | 23.79 | humidity | 80 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 601 | 23.81 | wind | 9 | 14400 | < th | dose independent | rect. | 1 | 13 |
| 610 | 23.82 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 9 |
| 655 | 23.87 | wind | 9 | 14400 | < th | dose independent | rect. | 23 | 15 |
| 698 | 23.92 | wind | 9 | 14400 | > th | dose dependent | rect. | 6 | 7 |
| 723 | 23.94 | wind | 3 | 14400 | < th | dose dependent | rect. | 3 | 23 |
| 734 | 23.95 | wind | 3 | 14400 | < th | dose dependent | rect. | 10 | 23 |
| 741 | 23.96 | wind | 3 | 14400 | < th | dose dependent | no | NA | NA |
| 747 | 23.97 | wind | 3 | 14400 | < th | dose dependent | rect. | 22 | 1 |
| 753 | 23.97 | wind | 3 | 14400 | < th | dose dependent | rect. | 12 | 23 |
| 768 | 23.99 | wind | 3 | 14400 | < th | dose independent | rect. | 12 | 21 |
| 785 | 24.00 | wind | 3 | 14400 | < th | dose dependent | rect. | 24 | 23 |
| 878 | 24.09 | humidity | 50 | 14400 | > th | dose dependent | rect. | 4 | 2 |
| 924 | 24.12 | temperature | 20 | 1440 | > th | dose dependent | rect. | 1 | 1 |
| 925 | 24.12 | temperature | 10 | 1440 | > th | dose dependent | rect. | 24 | 1 |
| 942 | 24.13 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 1 |