FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0540000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.33 (0.0348) R2 : 0.771
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.698 (0.0858) R2dC : 0.0333 R2C : -0.0796
β3 : -2.26 (0.137) R2dE : 0.15 R2E : 0.175
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 2.12 (0.0757) R2dN8 : 0.556 R2N8 : 0.581
σ : 0.647
deviance : 193.27
__
_____
C
peak time of C : 2.9
E
wheather : temperature
threshold : 18.8
memory length : 7703
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
176.2 0.624 5.56 -1.13 0.703 -1.04 -0.0647 5.23 1.76 2.8 21.3 4526 -- --
187.77 0.638 5.37 -0.797 0.679 -2.69 0.0699 -- 1.97 2.08 18.48 10410 -- --
176.22 0.618 5.56 -1.13 0.703 -1.04 -- 5.23 1.76 2.78 21.31 4528 -- --
186.73 0.636 5.37 -0.866 0.69 -2.78 -- -- 1.94 2.8 18.46 10400 -- --
203.23 0.664 5.55 -1.04 -- -1.09 -- 4.94 1.76 -- 21.5 4026 -- --
277.47 0.781 5.22 1.1 0.728 -- -0.0455 -- 2.6 2.81 -- -- -- --
277.48 0.78 5.22 1.1 0.728 -- -- -- 2.6 2.8 -- -- -- --
213.26 0.68 5.36 -0.82 -- -2.81 -- -- 1.96 -- 18.52 9760 -- --
193.27 0.647 5.33 -- 0.698 -2.26 -- -- 2.12 2.9 18.8 7703 -- --
308.18 0.82 5.21 1.13 -- -- -- -- 2.62 -- -- -- -- --
309.25 0.823 5.24 -- 0.749 -- -- -- 2.48 2.81 -- -- -- --
220.44 0.692 5.32 -- -- -2.32 -- -- 2.13 -- 18.75 6983 -- --
341.8 0.863 5.24 -- -- -- -- -- 2.49 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 154.16 humidity 90.0 43200 > th dose dependent rect. 12 2
3 156.27 atmosphere 995.0 43200 < th dose dependent rect. 21 16
6 156.31 humidity 90.0 43200 > th dose independent rect. 12 1
19 156.65 radiation 1.0 43200 > th dose independent rect. 10 5
24 156.74 radiation 1.0 43200 < th dose independent rect. 10 5
26 156.79 radiation 1.0 43200 < th dose dependent rect. 10 5
30 156.88 radiation 1.0 43200 < th dose independent rect. 11 2
31 156.94 radiation 1.0 43200 > th dose independent rect. 11 2
32 156.97 atmosphere 995.0 43200 < th dose dependent sin 7 NA
35 157.06 atmosphere 995.0 43200 < th dose independent rect. 2 12
37 157.08 radiation 1.0 43200 < th dose dependent rect. 11 2
48 157.28 humidity 90.0 43200 < th dose independent rect. 12 1
50 157.34 atmosphere 995.0 43200 < th dose independent rect. 3 10
54 157.37 atmosphere 995.0 43200 > th dose independent rect. 4 7
72 157.65 radiation 1.0 43200 < th dose independent rect. 14 1
73 157.65 radiation 1.0 43200 < th dose dependent rect. 14 1
77 157.71 atmosphere 995.0 43200 < th dose independent rect. 4 7
80 157.78 radiation 1.0 43200 > th dose independent rect. 14 1
82 157.90 atmosphere 995.0 43200 < th dose dependent rect. 3 6
83 157.94 atmosphere 995.0 43200 < th dose dependent rect. 2 8
86 158.01 atmosphere 995.0 43200 < th dose independent rect. 5 4
102 158.45 atmosphere 995.0 43200 > th dose independent rect. 5 5
122 158.91 radiation 30.0 43200 < th dose independent rect. 2 5
129 159.02 atmosphere 995.0 43200 > th dose independent rect. 6 2
136 159.13 wind 9.0 43200 < th dose independent rect. 21 3
149 159.27 radiation 30.0 43200 < th dose independent rect. 4 3
152 159.34 precipitation 0.1 43200 < th dose independent rect. 6 5
153 159.34 precipitation 0.1 43200 < th dose dependent rect. 6 5
161 159.55 precipitation 0.1 43200 < th dose independent rect. 6 7
164 159.55 precipitation 0.1 43200 < th dose dependent rect. 6 7
167 159.56 radiation 30.0 43200 < th dose independent rect. 6 1
168 159.56 atmosphere 995.0 43200 > th dose independent rect. 2 12
175 159.66 precipitation 0.1 43200 > th dose independent rect. 6 5
177 159.69 precipitation 0.1 43200 > th dose dependent rect. 6 5
190 159.81 radiation 30.0 43200 < th dose independent rect. 19 12
194 159.84 precipitation 0.1 43200 > th dose dependent rect. 6 7
198 159.90 precipitation 0.1 43200 > th dose independent rect. 6 7
202 159.93 wind 9.0 43200 > th dose independent rect. 21 3
207 159.97 radiation 30.0 43200 < th dose independent rect. 21 10
211 160.03 radiation 30.0 43200 < th dose independent rect. 17 14
213 160.04 atmosphere 995.0 43200 < th dose dependent rect. 5 3
235 160.37 temperature 20.0 43200 > th dose independent rect. 7 1
248 160.62 temperature 20.0 43200 > th dose independent rect. 6 4
255 160.74 wind 9.0 43200 > th dose independent rect. 22 1
257 160.75 temperature 20.0 43200 < th dose independent rect. 7 1
266 160.86 temperature 20.0 43200 < th dose independent rect. 6 3
267 160.91 wind 7.0 43200 > th dose dependent rect. 21 3
273 160.98 wind 9.0 43200 < th dose independent rect. 22 1
289 161.26 radiation 1.0 43200 < th dose dependent rect. 6 3
291 161.34 wind 7.0 43200 > th dose dependent rect. 21 5
294 161.40 radiation 1.0 43200 < th dose dependent rect. 6 1
306 161.61 temperature 20.0 43200 < th dose independent rect. 6 20
316 161.71 temperature 20.0 43200 > th dose independent rect. 5 19
361 161.93 wind 7.0 43200 > th dose independent rect. 21 16
362 161.93 wind 7.0 43200 < th dose independent rect. 21 16
367 161.94 temperature 25.0 43200 < th dose dependent rect. 9 1
369 161.96 temperature 20.0 43200 < th dose independent rect. 16 8
389 162.04 temperature 20.0 43200 < th dose independent rect. 17 6
399 162.08 temperature 20.0 43200 < th dose independent sin 17 NA
488 162.35 temperature 20.0 43200 > th dose independent sin 1 NA
500 162.39 temperature 20.0 43200 > th dose independent sin 18 NA
513 162.44 temperature 20.0 43200 < th dose independent sin 2 NA
514 162.44 temperature 20.0 43200 < th dose independent no NA NA
516 162.44 wind 9.0 43200 > th dose dependent rect. 24 2
530 162.49 temperature 20.0 43200 < th dose independent rect. 18 1
531 162.49 temperature 20.0 43200 < th dose independent rect. 18 3
533 162.49 wind 7.0 43200 < th dose independent rect. 4 9
536 162.49 temperature 20.0 43200 < th dose independent rect. 14 23
562 162.56 wind 7.0 43200 < th dose independent rect. 1 12
571 162.57 temperature 20.0 43200 < th dose independent rect. 20 23
573 162.58 wind 7.0 43200 < th dose independent rect. 9 1
576 162.58 wind 7.0 43200 > th dose independent rect. 4 9
598 162.62 wind 7.0 43200 > th dose independent rect. 1 12
599 162.63 wind 7.0 43200 < th dose independent rect. 1 1
605 162.64 temperature 20.0 43200 > th dose independent rect. 16 8
632 162.68 temperature 20.0 43200 > th dose independent no NA NA
661 162.74 temperature 20.0 43200 < th dose independent rect. 20 1
677 162.76 temperature 20.0 43200 > th dose independent rect. 14 23
686 162.78 temperature 20.0 43200 > th dose independent rect. 20 23
746 162.90 atmosphere 995.0 43200 > th dose independent rect. 19 19
814 163.04 wind 7.0 43200 < th dose independent rect. 7 5
824 163.06 wind 7.0 43200 > th dose independent rect. 7 5
839 163.10 temperature 20.0 43200 > th dose independent rect. 17 2
881 163.19 wind 7.0 43200 > th dose independent rect. 1 1
897 163.22 wind 7.0 43200 > th dose independent rect. 9 1
918 163.29 precipitation 0.1 43200 < th dose independent rect. 9 2
922 163.29 precipitation 0.1 43200 < th dose dependent rect. 9 2