Os12g0535300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os12g0535300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 26.37 | 0.241 | 11.7 | 1.13 | 0.449 | 0.493 | -0.044 | -0.595 | 0.307 | 20.8 | 23.9 | 1180 | -- | -- |
| 27.58 | 0.245 | 11.7 | 0.978 | 0.427 | 0.49 | -0.132 | -- | 0.296 | 20.1 | 23.8 | 1502 | -- | -- |
| 26.35 | 0.239 | 11.7 | 1.12 | 0.46 | 0.49 | -- | -0.576 | 0.304 | 20.9 | 23.92 | 1128 | -- | -- |
| 27.23 | 0.243 | 11.8 | 0.941 | 0.425 | 0.457 | -- | -- | 0.239 | 20.2 | 23.25 | 1919 | -- | -- |
| 38.09 | 0.287 | 11.7 | 1.07 | -- | 0.493 | -- | -0.457 | 0.275 | -- | 24 | 2859 | -- | -- |
| 36.59 | 0.284 | 11.8 | 0.726 | 0.43 | -- | -0.000312 | -- | 0.0445 | 20.2 | -- | -- | -- | -- |
| 36.59 | 0.283 | 11.8 | 0.726 | 0.43 | -- | -- | -- | 0.0445 | 20.2 | -- | -- | -- | -- |
| 37.57 | 0.285 | 11.8 | 0.912 | -- | 0.468 | -- | -- | 0.238 | -- | 23.2 | 1568 | -- | -- |
| 47.54 | 0.321 | 11.8 | -- | 0.408 | 0.284 | -- | -- | 0.103 | 20.3 | 23.3 | 1945 | -- | -- |
| 46.76 | 0.32 | 11.8 | 0.722 | -- | -- | -- | -- | 0.0395 | -- | -- | -- | -- | -- |
| 50.46 | 0.332 | 11.8 | -- | 0.426 | -- | -- | -- | -0.0363 | 20.3 | -- | -- | -- | -- |
| 57.22 | 0.352 | 11.8 | -- | -- | 0.259 | -- | -- | 0.059 | -- | 24 | 1407 | -- | -- |
| 60.51 | 0.363 | 11.8 | -- | -- | -- | -- | -- | -0.0407 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 25.66 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 2 |
| 31 | 26.45 | radiation | 1 | 14400 | < th | dose dependent | rect. | 4 | 1 |
| 35 | 26.46 | radiation | 1 | 14400 | < th | dose dependent | rect. | 2 | 3 |
| 58 | 26.58 | temperature | 25 | 1440 | < th | dose independent | rect. | 13 | 11 |
| 62 | 26.60 | temperature | 25 | 1440 | < th | dose independent | rect. | 14 | 9 |
| 70 | 26.63 | temperature | 25 | 1440 | > th | dose independent | rect. | 13 | 10 |
| 75 | 26.64 | wind | 5 | 43200 | > th | dose dependent | rect. | 13 | 2 |
| 105 | 26.72 | temperature | 25 | 1440 | > th | dose dependent | rect. | 14 | 17 |
| 122 | 26.76 | temperature | 20 | 720 | > th | dose dependent | rect. | 13 | 20 |
| 150 | 26.80 | temperature | 20 | 1440 | > th | dose dependent | sin | 18 | NA |
| 183 | 26.86 | temperature | 25 | 1440 | < th | dose independent | rect. | 6 | 18 |
| 185 | 26.86 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 11 |
| 192 | 26.87 | temperature | 10 | 1440 | > th | dose dependent | rect. | 16 | 2 |
| 225 | 26.91 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 7 |
| 243 | 26.94 | temperature | 25 | 1440 | < th | dose independent | sin | 19 | NA |
| 251 | 26.95 | temperature | 25 | 1440 | < th | dose independent | rect. | 15 | 5 |
| 256 | 26.95 | temperature | 10 | 720 | > th | dose dependent | rect. | 13 | 20 |
| 281 | 26.98 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 299 | 27.01 | temperature | 25 | 1440 | > th | dose independent | rect. | 15 | 5 |
| 314 | 27.03 | temperature | 25 | 1440 | > th | dose independent | rect. | 6 | 17 |
| 352 | 27.08 | temperature | 25 | 1440 | > th | dose independent | sin | 19 | NA |
| 358 | 27.08 | temperature | 20 | 720 | > th | dose dependent | rect. | 18 | 15 |
| 387 | 27.12 | temperature | 20 | 1440 | > th | dose dependent | rect. | 4 | 18 |
| 392 | 27.13 | wind | 7 | 43200 | < th | dose independent | rect. | 13 | 3 |
| 491 | 27.20 | radiation | 40 | 43200 | > th | dose dependent | rect. | 10 | 1 |
| 506 | 27.21 | wind | 5 | 43200 | > th | dose independent | rect. | 11 | 4 |
| 558 | 27.24 | wind | 7 | 43200 | < th | dose independent | rect. | 10 | 7 |
| 572 | 27.25 | wind | 7 | 43200 | > th | dose independent | rect. | 13 | 3 |
| 574 | 27.25 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 592 | 27.26 | radiation | 40 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 606 | 27.26 | temperature | 20 | 1440 | > th | dose dependent | rect. | 21 | 23 |
| 616 | 27.27 | wind | 5 | 43200 | > th | dose dependent | rect. | 11 | 10 |
| 699 | 27.34 | radiation | 30 | 14400 | < th | dose independent | rect. | 16 | 13 |
| 708 | 27.35 | wind | 7 | 43200 | > th | dose independent | rect. | 10 | 7 |
| 720 | 27.36 | radiation | 30 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 749 | 27.38 | radiation | 40 | 43200 | < th | dose independent | rect. | 16 | 19 |
| 764 | 27.39 | radiation | 40 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 767 | 27.39 | radiation | 40 | 43200 | < th | dose independent | rect. | 7 | 4 |
| 808 | 27.40 | temperature | 30 | 1440 | < th | dose dependent | rect. | 16 | 3 |
| 819 | 27.41 | wind | 5 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 821 | 27.41 | radiation | 30 | 14400 | < th | dose independent | rect. | 16 | 9 |
| 842 | 27.42 | temperature | 30 | 1440 | < th | dose dependent | rect. | 15 | 7 |
| 862 | 27.43 | temperature | 20 | 720 | > th | dose dependent | sin | 11 | NA |
| 864 | 27.43 | temperature | 30 | 1440 | < th | dose dependent | rect. | 15 | 5 |
| 903 | 27.45 | radiation | 20 | 43200 | < th | dose independent | rect. | 17 | 16 |
| 961 | 27.48 | radiation | 20 | 43200 | < th | dose independent | rect. | 6 | 3 |
| 982 | 27.48 | radiation | 40 | 43200 | > th | dose dependent | rect. | 7 | 4 |