FiT-DB / Search/ Help/ Sample detail

Os12g0534100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11 (0.0246) R2 : 0.64
β1 : -1.47 (0.0901) R2dD : 0.22 R2D : 0.123
β2 : 0.994 (0.0816) R2dC : 0.227 R2C : -0.291
β3 : -1.96 (0.104) R2dE : 0.541 R2E : 0.0353
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.758 (0.0525) R2dN8 : 0.221 R2N8 : 0.118
σ : 0.459
deviance : 97.32
__
_____
C
peak time of C : 13.1
E
wheather : radiation
threshold : 0.05839
memory length : 316
response mode : > th
dose dependency : dose independent
G
type of G : sin
peak or start time of G : 3.98
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
95.39 0.459 11 -1.44 0.931 -1.79 -1.06 1.22 -0.757 13 0.1345 286 3.67 --
97.15 0.459 11 -1.46 0.966 -1.85 -0.343 -- -0.767 13.1 0.14 296 3.77 --
97.5 0.46 11 -1.5 1.05 -2.04 -- 0.322 -0.76 12.9 0.05822 316 3.95 --
97.32 0.459 11 -1.47 0.994 -1.96 -- -- -0.758 13.1 0.05839 316 3.98 --
121.78 0.514 11.1 -1.47 -- -1.17 -- 0.54 -0.776 -- 0.1089 238 3.97 --
142.56 0.56 11.1 -1.55 0.751 -- -0.626 -- -0.798 19.1 -- -- -- --
143.48 0.561 11.1 -1.54 0.748 -- -- -- -0.801 19.3 -- -- -- --
120.52 0.511 11.1 -1.55 -- -1.26 -- -- -0.798 -- 0.121 232 3.83 --
155.01 0.58 11 -- 0.904 -1.88 -- -- -0.636 13.5 0.009998 313 4.27 --
173.21 0.615 11.1 -1.56 -- -- -- -- -0.813 -- -- -- -- --
206.32 0.672 11 -- 0.763 -- -- -- -0.629 19.2 -- -- -- --
181.92 0.628 11 -- -- -1.34 -- -- -0.609 -- 0.0001505 222 3.89 --
237.14 0.719 11 -- -- -- -- -- -0.641 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 88.91 temperature 20.0 270 > th dose independent rect. 5 5
3 93.64 temperature 10.0 90 > th dose dependent rect. 11 18
7 94.70 temperature 15.0 270 > th dose independent rect. 5 16
11 95.76 temperature 10.0 270 > th dose dependent rect. 9 20
12 96.03 temperature 10.0 270 > th dose dependent rect. 5 5
15 96.36 temperature 30.0 270 < th dose independent rect. 5 5
16 96.53 precipitation 0.1 270 < th dose independent rect. 10 19
17 96.53 precipitation 0.1 270 < th dose dependent rect. 10 19
22 96.92 radiation 1.0 270 < th dose dependent rect. 21 14
25 97.37 temperature 10.0 270 > th dose dependent rect. 21 8
28 97.57 atmosphere 995.0 270 > th dose independent rect. 5 16
30 97.83 radiation 1.0 270 < th dose dependent sin 9 NA
37 98.24 wind 7.0 270 < th dose independent rect. 5 5
41 98.45 wind 9.0 270 < th dose dependent rect. 5 5
42 98.50 atmosphere 1000.0 270 > th dose independent rect. 5 5
44 98.68 temperature 30.0 270 < th dose independent rect. 4 7
48 98.80 precipitation 0.1 270 < th dose independent rect. 21 8
49 98.80 precipitation 0.1 270 < th dose dependent rect. 21 8
50 98.85 wind 7.0 270 < th dose independent rect. 21 8
52 98.90 atmosphere 1000.0 270 > th dose independent rect. 16 18
56 99.05 precipitation 0.1 270 < th dose independent rect. 5 5
57 99.05 precipitation 0.1 270 < th dose dependent rect. 5 5
59 99.12 wind 9.0 270 < th dose independent rect. 10 19
60 99.16 radiation 40.0 270 < th dose independent rect. 5 5
65 99.21 atmosphere 1015.0 270 < th dose independent rect. 5 5
66 99.21 temperature 10.0 270 > th dose independent rect. 10 19
68 99.30 humidity 50.0 270 > th dose independent rect. 5 5
73 99.49 radiation 1.0 270 < th dose dependent rect. 21 8
77 99.61 atmosphere 995.0 270 > th dose independent rect. 17 16
78 99.64 temperature 10.0 270 > th dose independent rect. 21 8
79 99.64 temperature 30.0 270 < th dose independent rect. 21 8
80 99.64 humidity 50.0 270 > th dose independent rect. 21 8
83 99.64 atmosphere 995.0 270 > th dose independent rect. 21 8
84 99.64 radiation 20.0 270 < th dose independent rect. 21 8
88 99.65 radiation 40.0 270 < th dose dependent rect. 21 8
89 99.66 radiation 20.0 270 < th dose dependent rect. 21 8
93 99.71 humidity 70.0 270 > th dose independent rect. 5 5
94 99.71 radiation 1.0 270 < th dose independent rect. 21 8
105 100.05 humidity 50.0 270 > th dose dependent rect. 5 5
107 100.08 radiation 1.0 270 > th dose independent rect. 10 7
108 100.16 temperature 15.0 10 > th dose dependent rect. 12 18
126 100.51 radiation 40.0 270 < th dose dependent rect. 5 5
139 100.76 wind 9.0 270 < th dose independent rect. 5 16
147 100.90 temperature 30.0 270 < th dose independent rect. 16 18
159 101.05 radiation 1.0 270 > th dose independent rect. 4 5
171 101.08 radiation 1.0 270 < th dose independent rect. 21 14
180 101.33 atmosphere 1015.0 270 < th dose independent rect. 21 8
190 101.72 radiation 1.0 270 > th dose independent sin 10 NA
192 101.75 atmosphere 1015.0 270 < th dose independent rect. 10 19
210 101.84 radiation 1.0 270 < th dose independent sin 10 NA
214 101.93 atmosphere 1015.0 270 < th dose independent rect. 5 16
215 101.97 radiation 40.0 270 < th dose independent rect. 5 17
218 102.01 humidity 50.0 270 > th dose independent rect. 17 16
221 102.07 precipitation 0.1 270 < th dose independent rect. 9 8
222 102.07 precipitation 0.1 270 < th dose dependent rect. 9 8
226 102.15 atmosphere 1000.0 270 > th dose independent rect. 15 8
229 102.21 temperature 10.0 270 > th dose independent rect. 9 8
230 102.21 atmosphere 1015.0 270 < th dose independent rect. 9 8
231 102.21 temperature 10.0 270 > th dose independent rect. 17 16
237 102.30 atmosphere 995.0 90 > th dose dependent rect. 17 18
242 102.36 humidity 70.0 270 > th dose independent rect. 17 16
245 102.38 wind 1.0 270 > th dose independent rect. 9 8
253 102.48 radiation 40.0 270 < th dose dependent rect. 5 17
257 102.54 wind 1.0 270 > th dose independent rect. 5 5
274 102.77 temperature 20.0 10 > th dose independent rect. 6 6
275 102.77 humidity 70.0 270 > th dose independent rect. 5 16
290 102.85 wind 9.0 270 < th dose independent rect. 17 16
296 102.91 wind 9.0 270 < th dose dependent rect. 21 8
298 102.92 precipitation 0.1 270 < th dose independent rect. 5 16
299 102.92 precipitation 0.1 270 < th dose dependent rect. 5 16
302 102.96 radiation 30.0 270 < th dose independent rect. 17 16
305 103.02 wind 9.0 270 < th dose independent rect. 9 8
319 103.20 temperature 30.0 270 < th dose independent rect. 5 16
321 103.23 wind 1.0 270 > th dose independent rect. 10 6
325 103.24 atmosphere 1015.0 90 < th dose dependent rect. 11 19
350 103.54 temperature 10.0 270 > th dose independent rect. 10 6
351 103.54 atmosphere 1015.0 270 < th dose independent rect. 10 6
352 103.54 temperature 10.0 270 > th dose independent rect. 16 18
410 103.81 wind 1.0 270 > th dose independent rect. 10 19
424 104.00 radiation 20.0 270 < th dose independent rect. 5 17
508 104.68 atmosphere 995.0 270 > th dose dependent rect. 5 4
515 104.71 radiation 30.0 270 < th dose independent rect. 14 9
535 104.86 atmosphere 1015.0 10 < th dose dependent rect. 12 18
576 105.21 temperature 10.0 270 > th dose dependent rect. 10 6
577 105.23 humidity 90.0 90 < th dose independent rect. 6 5
633 105.74 humidity 50.0 270 > th dose dependent rect. 21 8
636 105.81 atmosphere 1015.0 270 < th dose independent rect. 23 16
638 105.81 humidity 60.0 270 > th dose dependent rect. 5 16
641 105.87 humidity 50.0 270 > th dose independent rect. 10 6
670 106.14 precipitation 0.1 270 < th dose independent rect. 17 16
671 106.14 precipitation 0.1 270 < th dose dependent rect. 17 16
685 106.21 atmosphere 995.0 270 > th dose independent rect. 10 6
708 106.35 atmosphere 1000.0 10 > th dose independent rect. 18 17
710 106.36 temperature 10.0 270 > th dose independent rect. 15 9
711 106.36 temperature 10.0 270 > th dose independent rect. 24 15
720 106.46 radiation 40.0 270 < th dose dependent rect. 14 9
728 106.51 precipitation 0.1 270 < th dose independent rect. 24 15
729 106.51 precipitation 0.1 270 < th dose dependent rect. 24 15
743 106.56 atmosphere 995.0 90 > th dose dependent rect. 6 17
758 106.78 humidity 50.0 270 > th dose independent rect. 23 16
781 106.91 atmosphere 995.0 270 > th dose independent rect. 10 19
785 106.93 atmosphere 1000.0 10 > th dose independent rect. 6 18
787 106.95 temperature 10.0 10 > th dose dependent rect. 6 6
802 107.00 atmosphere 995.0 270 > th dose dependent rect. 15 8
862 107.38 atmosphere 995.0 270 > th dose independent rect. 24 15
916 107.76 humidity 50.0 270 > th dose independent rect. 10 19
928 107.88 wind 9.0 270 < th dose independent rect. 24 15
931 107.88 radiation 40.0 270 < th dose dependent rect. 16 18
957 108.10 wind 9.0 270 < th dose independent rect. 15 8
959 108.10 atmosphere 995.0 270 > th dose dependent rect. 6 2