Os12g0532500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
FiT-DB / Search/ Help/ Sample detail
|
Os12g0532500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Hypothetical protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 44.53 | 0.314 | 9.5 | -1.88 | 0.161 | -1.48 | -0.0272 | 0.49 | -0.0313 | 8.37 | 24.3 | 6072 | -- | -- |
| 44.51 | 0.311 | 9.49 | -1.85 | 0.164 | -1.65 | -0.0554 | -- | -0.0252 | 8.37 | 23.6 | 6167 | -- | -- |
| 44.49 | 0.311 | 9.49 | -1.87 | 0.159 | -1.55 | -- | 0.322 | -0.0247 | 8.24 | 23.9 | 6075 | -- | -- |
| 44.51 | 0.311 | 9.49 | -1.85 | 0.165 | -1.64 | -- | -- | -0.019 | 8.28 | 23.6 | 6133 | -- | -- |
| 45.86 | 0.315 | 9.5 | -1.86 | -- | -1.56 | -- | 0.238 | -0.0204 | -- | 23.8 | 5952 | -- | -- |
| 77.03 | 0.411 | 9.4 | -0.99 | 0.161 | -- | -0.0278 | -- | 0.378 | 7.86 | -- | -- | -- | -- |
| 77.03 | 0.411 | 9.4 | -0.991 | 0.161 | -- | -- | -- | 0.378 | 7.77 | -- | -- | -- | -- |
| 45.89 | 0.315 | 9.49 | -1.83 | -- | -1.62 | -- | -- | -0.013 | -- | 23.66 | 5953 | -- | -- |
| 90.47 | 0.445 | 9.4 | -- | 0.169 | -0.923 | -- | -- | 0.374 | 4.69 | 23.6 | 6133 | -- | -- |
| 78.43 | 0.414 | 9.4 | -0.989 | -- | -- | -- | -- | 0.38 | -- | -- | -- | -- | -- |
| 102.91 | 0.475 | 9.37 | -- | 0.155 | -- | -- | -- | 0.488 | 8.22 | -- | -- | -- | -- |
| 91.92 | 0.448 | 9.4 | -- | -- | -0.869 | -- | -- | 0.383 | -- | 23.66 | 5953 | -- | -- |
| 104.23 | 0.477 | 9.38 | -- | -- | -- | -- | -- | 0.49 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 44.21 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 11 |
| 2 | 44.22 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 11 |
| 3 | 44.32 | humidity | 60 | 43200 | < th | dose dependent | rect. | 6 | 6 |
| 6 | 44.37 | humidity | 60 | 43200 | < th | dose dependent | rect. | 20 | 17 |
| 27 | 44.48 | humidity | 60 | 43200 | < th | dose dependent | sin | 8 | NA |
| 30 | 44.50 | humidity | 60 | 43200 | < th | dose independent | rect. | 19 | 17 |
| 36 | 44.52 | humidity | 60 | 43200 | < th | dose independent | rect. | 7 | 3 |
| 45 | 44.61 | humidity | 60 | 43200 | > th | dose independent | rect. | 6 | 4 |
| 47 | 44.61 | humidity | 70 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 58 | 44.71 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 61 | 44.71 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 7 |
| 70 | 44.74 | humidity | 60 | 43200 | < th | dose independent | rect. | 2 | 9 |
| 75 | 44.77 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 93 | 44.82 | humidity | 60 | 43200 | > th | dose independent | rect. | 21 | 14 |
| 105 | 44.87 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 3 |
| 135 | 44.95 | temperature | 25 | 4320 | < th | dose dependent | rect. | 20 | 7 |
| 153 | 45.03 | temperature | 25 | 4320 | < th | dose dependent | rect. | 19 | 13 |
| 162 | 45.05 | humidity | 60 | 43200 | > th | dose independent | rect. | 2 | 9 |
| 163 | 45.05 | temperature | 25 | 4320 | < th | dose dependent | sin | 11 | NA |
| 266 | 45.28 | temperature | 25 | 4320 | < th | dose dependent | sin | 14 | NA |
| 271 | 45.29 | temperature | 10 | 4320 | > th | dose dependent | rect. | 22 | 1 |
| 363 | 45.45 | temperature | 10 | 4320 | > th | dose dependent | rect. | 17 | 13 |
| 374 | 45.47 | temperature | 25 | 4320 | > th | dose independent | rect. | 11 | 1 |
| 375 | 45.47 | temperature | 25 | 4320 | < th | dose dependent | rect. | 5 | 2 |
| 389 | 45.49 | temperature | 25 | 4320 | < th | dose dependent | rect. | 2 | 1 |
| 402 | 45.50 | temperature | 10 | 4320 | > th | dose dependent | rect. | 21 | 6 |
| 403 | 45.50 | temperature | 10 | 4320 | > th | dose dependent | rect. | 20 | 8 |
| 417 | 45.52 | temperature | 10 | 4320 | > th | dose dependent | rect. | 21 | 11 |
| 421 | 45.53 | temperature | 25 | 4320 | < th | dose independent | rect. | 11 | 1 |
| 427 | 45.53 | temperature | 10 | 4320 | > th | dose dependent | rect. | 19 | 10 |
| 447 | 45.55 | temperature | 10 | 4320 | > th | dose dependent | sin | 12 | NA |
| 530 | 45.62 | temperature | 10 | 4320 | > th | dose dependent | rect. | 2 | 5 |
| 607 | 45.69 | temperature | 20 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 620 | 45.70 | temperature | 20 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 622 | 45.70 | temperature | 10 | 4320 | > th | dose dependent | rect. | 2 | 1 |
| 703 | 45.76 | temperature | 10 | 4320 | > th | dose dependent | rect. | 5 | 1 |
| 745 | 45.79 | temperature | 25 | 4320 | < th | dose dependent | no | NA | NA |
| 804 | 45.83 | temperature | 20 | 4320 | > th | dose dependent | rect. | 17 | 1 |
| 882 | 45.87 | temperature | 25 | 4320 | < th | dose dependent | rect. | 2 | 23 |
| 883 | 45.87 | temperature | 25 | 4320 | < th | dose dependent | rect. | 5 | 23 |