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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0530200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, unclassifiable transcript.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.94 (0.0149) R2 : 0.00059
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0163 (0.0315) R2dN8 : 0.000762 R2N8 : 0.00059
σ : 0.281
deviance : 36.35
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
35.07 0.278 2.97 -0.0783 0.0415 0.543 -0.267 -1.8 0.0395 1.13 0.4374 3961 -- --
35.52 0.278 2.93 0.0151 0.0495 0.215 -0.214 -- 0.035 0.876 1.5 3251 -- --
35.35 0.277 2.97 -0.0737 0.0414 0.548 -- -1.85 0.0412 1.09 0.4524 3956 -- --
35.73 0.278 2.93 0.0296 0.0353 0.244 -- -- 0.0314 2.35 1.956 3362 -- --
35.41 0.277 2.99 -0.161 -- 0.877 -- -3.1 0.0437 -- 0.4781 3957 -- --
35.89 0.281 2.94 0.0516 0.0389 -- -0.25 -- 0.0211 1.07 -- -- -- --
36.15 0.282 2.93 0.0603 0.0407 -- -- -- 0.0223 1.91 -- -- -- --
35.82 0.279 2.93 0.0334 -- 0.234 -- -- 0.0302 -- 1.928 3277 -- --
35.75 0.278 2.93 -- 0.0409 0.247 -- -- 0.0262 2.61 1.923 3324 -- --
36.25 0.281 2.93 0.062 -- -- -- -- 0.0232 -- -- -- -- --
36.24 0.282 2.94 -- 0.0418 -- -- -- 0.0155 1.94 -- -- -- --
35.85 0.279 2.93 -- -- 0.248 -- -- 0.0273 -- 1.903 3253 -- --
36.35 0.281 2.94 -- -- -- -- -- 0.0163 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 33.18 temperature 15.0 1440 > th dose independent rect. 23 1
2 33.33 humidity 90.0 90 < th dose independent rect. 22 1
3 33.33 temperature 15.0 30 > th dose independent rect. 23 23
5 33.43 wind 9.0 4320 < th dose independent rect. 23 1
10 33.44 temperature 30.0 1440 < th dose independent rect. 23 1
14 33.44 humidity 50.0 1440 > th dose independent rect. 23 1
24 33.44 atmosphere 995.0 1440 > th dose independent rect. 23 1
25 33.44 radiation 1.0 1440 < th dose independent rect. 23 1
45 33.44 temperature 10.0 1440 > th dose independent rect. 24 23
48 33.44 radiation 1.0 1440 < th dose dependent rect. 23 1
53 33.46 atmosphere 1005.0 30 > th dose dependent rect. 22 1
56 33.47 temperature 25.0 30 > th dose independent rect. 22 1
58 33.47 temperature 25.0 30 > th dose dependent rect. 22 1
59 33.48 wind 3.0 90 < th dose independent rect. 22 1
60 33.48 atmosphere 1005.0 30 > th dose independent rect. 22 1
62 33.48 humidity 90.0 30 < th dose dependent rect. 22 1
64 33.49 wind 1.0 30 > th dose independent rect. 22 1
65 33.49 temperature 10.0 30 > th dose dependent rect. 22 1
73 33.50 temperature 10.0 30 > th dose independent rect. 22 1
76 33.50 temperature 30.0 30 < th dose independent rect. 22 1
77 33.50 humidity 50.0 30 > th dose independent rect. 22 1
80 33.50 atmosphere 995.0 30 > th dose independent rect. 22 1
82 33.50 atmosphere 1010.0 30 < th dose independent rect. 22 1
84 33.50 radiation 1.0 30 < th dose independent rect. 22 1
89 33.50 precipitation 0.1 30 < th dose independent rect. 22 1
91 33.50 radiation 1.0 30 < th dose dependent rect. 22 1
96 33.50 precipitation 0.1 30 < th dose dependent rect. 22 1
99 33.51 wind 1.0 30 > th dose dependent rect. 22 1
100 33.51 wind 7.0 30 < th dose dependent rect. 22 1
103 33.52 humidity 50.0 30 > th dose dependent rect. 22 1
109 33.56 atmosphere 1015.0 30 < th dose dependent rect. 22 1
110 33.57 wind 9.0 30 < th dose independent rect. 23 23
111 33.57 temperature 30.0 30 < th dose dependent rect. 22 1
206 34.01 atmosphere 995.0 30 > th dose independent rect. 23 23
211 34.07 wind 5.0 90 < th dose independent rect. 21 6
216 34.12 atmosphere 1015.0 90 < th dose independent rect. 21 6
219 34.15 precipitation 0.1 30 < th dose independent rect. 23 23
220 34.15 wind 7.0 10 < th dose dependent rect. 22 5
221 34.15 atmosphere 995.0 90 > th dose dependent rect. 21 6
222 34.15 precipitation 0.1 30 < th dose dependent rect. 23 23
225 34.17 atmosphere 995.0 90 > th dose independent rect. 3 18
233 34.20 atmosphere 1005.0 30 > th dose independent rect. 22 5
235 34.21 temperature 15.0 90 > th dose independent rect. 3 18
240 34.22 humidity 80.0 30 > th dose independent rect. 22 5
241 34.22 humidity 90.0 90 < th dose independent rect. 21 6
246 34.22 temperature 10.0 30 > th dose dependent rect. 3 19
248 34.23 precipitation 0.1 90 < th dose independent rect. 21 6
249 34.23 wind 9.0 90 < th dose independent rect. 3 18
252 34.23 precipitation 0.1 90 < th dose dependent rect. 21 6
256 34.24 temperature 10.0 90 > th dose independent rect. 21 6
257 34.24 temperature 30.0 90 < th dose independent rect. 21 6
258 34.24 humidity 50.0 90 > th dose independent rect. 21 6
261 34.24 atmosphere 995.0 90 > th dose independent rect. 21 6
262 34.24 radiation 1.0 90 < th dose independent rect. 21 6
268 34.24 atmosphere 1015.0 90 < th dose independent rect. 3 18
270 34.24 radiation 1.0 90 < th dose dependent rect. 21 6
279 34.27 precipitation 0.1 1440 < th dose independent rect. 23 1
281 34.27 wind 1.0 90 > th dose independent rect. 21 6
284 34.27 precipitation 0.1 1440 < th dose dependent rect. 23 1
285 34.28 precipitation 0.1 90 < th dose independent rect. 3 18
286 34.28 precipitation 0.1 90 < th dose dependent rect. 3 18
316 34.31 radiation 20.0 10 < th dose dependent rect. 23 23
319 34.32 radiation 10.0 10 < th dose independent rect. 23 23
359 34.36 temperature 10.0 30 > th dose dependent rect. 23 23
374 34.40 radiation 20.0 4320 < th dose dependent rect. 23 5
378 34.41 temperature 20.0 270 < th dose independent rect. 20 1
380 34.41 temperature 10.0 1440 > th dose independent rect. 23 5
383 34.41 temperature 30.0 1440 < th dose independent rect. 23 5
387 34.41 humidity 50.0 1440 > th dose independent rect. 23 5
396 34.41 atmosphere 995.0 1440 > th dose independent rect. 23 5
397 34.41 radiation 1.0 1440 < th dose independent rect. 23 5
418 34.41 temperature 10.0 1440 > th dose independent rect. 4 19
422 34.41 radiation 1.0 1440 < th dose dependent rect. 23 5
434 34.42 radiation 10.0 10 < th dose independent rect. 3 19
449 34.44 temperature 15.0 10 > th dose independent rect. 3 23
458 34.45 temperature 10.0 30 > th dose dependent rect. 22 5
459 34.45 humidity 50.0 10 > th dose dependent rect. 22 5
513 34.49 radiation 20.0 10 < th dose dependent rect. 3 19
536 34.52 temperature 20.0 270 < th dose dependent rect. 21 1
557 34.53 temperature 15.0 270 > th dose independent rect. 15 15
594 34.54 temperature 15.0 270 > th dose dependent rect. 3 1
610 34.55 temperature 15.0 30 > th dose dependent rect. 3 4
712 34.59 wind 1.0 30 < th dose independent rect. 2 1
716 34.59 wind 9.0 1440 < th dose independent rect. 23 5
721 34.59 humidity 50.0 90 > th dose independent rect. 3 18
723 34.59 wind 3.0 30 < th dose dependent rect. 2 1
729 34.60 humidity 90.0 30 > th dose independent rect. 2 1
743 34.60 humidity 50.0 30 > th dose dependent rect. 2 1
747 34.60 atmosphere 1015.0 30 < th dose dependent rect. 2 1
759 34.61 temperature 10.0 30 > th dose independent rect. 2 1
761 34.61 temperature 30.0 30 < th dose independent rect. 2 1
762 34.61 humidity 50.0 30 > th dose independent rect. 2 1
766 34.61 atmosphere 995.0 30 > th dose independent rect. 2 1
767 34.61 atmosphere 1010.0 30 < th dose independent rect. 2 1
769 34.61 radiation 1.0 30 < th dose independent rect. 2 1
774 34.61 precipitation 0.1 30 < th dose independent rect. 2 1
776 34.61 radiation 20.0 10 < th dose independent rect. 3 6
778 34.61 atmosphere 1015.0 10 < th dose independent rect. 22 14
783 34.61 humidity 50.0 30 > th dose independent rect. 23 23
784 34.61 temperature 10.0 30 > th dose dependent rect. 2 1
787 34.61 atmosphere 1005.0 30 > th dose dependent rect. 2 1
788 34.61 radiation 1.0 30 < th dose dependent rect. 2 1
793 34.61 precipitation 0.1 30 < th dose dependent rect. 2 1
798 34.61 temperature 10.0 30 > th dose dependent rect. 3 6
808 34.62 temperature 30.0 30 < th dose dependent rect. 2 1
809 34.62 atmosphere 995.0 30 > th dose dependent rect. 2 1
824 34.63 wind 1.0 10 > th dose independent rect. 24 22
835 34.64 temperature 15.0 1440 > th dose independent rect. 13 10
842 34.64 radiation 10.0 10 < th dose independent rect. 3 23
876 34.65 wind 1.0 90 > th dose independent rect. 3 18
883 34.65 atmosphere 1015.0 90 < th dose independent rect. 7 20
905 34.66 humidity 80.0 270 > th dose independent rect. 19 4
907 34.66 atmosphere 995.0 10 > th dose independent rect. 12 10
912 34.66 wind 9.0 30 < th dose independent rect. 3 23
921 34.66 radiation 1.0 270 < th dose dependent rect. 5 21
988 34.68 wind 1.0 30 > th dose independent rect. 2 1
997 34.68 atmosphere 1015.0 30 < th dose independent rect. 9 18